PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g34270.1 | ||||||||
Common Name | Os02g0546800, OSJNBa0051E21.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 217aa MW: 22518.4 Da PI: 11.5575 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58 | 2.4e-18 | 92 | 141 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f t e+Aa+a++aa ++++g LOC_Os02g34270.1 92 RYRGVRRRP-WGKWAAEIRDPR----KaARVWLGTFRTTEDAARAYDAAVLRFRG 141 7********.**********94....36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.66E-22 | 92 | 150 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 25.725 | 92 | 149 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-31 | 92 | 151 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-33 | 92 | 155 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-12 | 92 | 141 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 93 | 104 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.56E-23 | 100 | 150 | No hit | No description |
PRINTS | PR00367 | 3.5E-11 | 115 | 131 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MAALFEAAET AAIVAALTRV IADGGRGGSG AGVPPPAPSL VVPPLAGTGG GRRVDVAREE 60 EMVGVVSAGD HTGEASVAAA GVVVAAPATA RRYRGVRRRP WGKWAAEIRD PRKAARVWLG 120 TFRTTEDAAR AYDAAVLRFR GRRAKLNFPE EASRPRRPWK GHDVDHMSCS PPSIANARFL 180 GSWIFGPPPP SRSVAAATTT LLGGSHGSNG ADNGRE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 88 | 149 | 1 | 63 | ATERF1 |
3gcc_A | 2e-21 | 88 | 149 | 1 | 63 | ATERF1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6YYH8 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g34270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g34270 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005611 | 0.0 | AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624467.2 | 1e-149 | ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | Q6YYH8 | 1e-148 | Q6YYH8_ORYSJ; AP2 domain-containing protein AP29-like | ||||
STRING | ORUFI02G21040.1 | 1e-103 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17401 | 8 | 11 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 1e-23 | related to AP2 6l |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g34270.1 |