PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g34260.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 218aa    MW: 22448.3 Da    PI: 11.1567
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g34260.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-1995144255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a++aa+++++g
  LOC_Os02g34260.1  95 RYRGVRRRP-WGKWAAEIRDPR----KaARVWLGTFRTAEDAARAYDAAALRFRG 144
                       7********.**********94....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-3295153IPR001471AP2/ERF domain
PfamPF008474.3E-1395144IPR001471AP2/ERF domain
PROSITE profilePS5103226.23995152IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-2395153IPR016177DNA-binding domain
SMARTSM003801.1E-3595158IPR001471AP2/ERF domain
PRINTSPR003671.1E-1196107IPR001471AP2/ERF domain
CDDcd000187.91E-14103153No hitNo description
PRINTSPR003671.1E-11118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MAALFEAAET AAIVAALTRV IADGGRGGGG GVCVPPPAPS LVVPPRAGTG GGRRVDVARE  60
EEMVGVVSAG DHAGGANVAE AAAAVVVAAP ATARRYRGVR RRPWGKWAAE IRDPRKAARV  120
WLGTFRTAED AARAYDAAAL RFRGRRAKLN FPEEVSRPWQ GHDVDHMSCS PPSISNARFL  180
GSWTFGPPQP PSRSVAAAAT TLLGGSHGGN GAENGRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2391156167ATERF1
3gcc_A7e-2391156167ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12330GGRGGGGG
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329930610.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g34260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g34260
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1078520.0AK107852.1 Oryza sativa Japonica Group cDNA clone:002-134-A10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878870.11e-150ethylene-responsive transcription factor ABR1
TrEMBLA0A0E0NG731e-149A0A0E0NG73_ORYRU; Uncharacterized protein
STRINGORUFI02G21030.11e-150(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17401811
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.16e-19related to AP2 6l