PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g33750.2
Common NameOs02g0542200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 816aa    MW: 92896 Da    PI: 7.701
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g33750.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR192.65.1e-2964153190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +fY+ YA ++GFsvr+++ +ks+++geit+r+fvCs+eg+++++k++ +++r++++ trtgC+a+l++++++ ++k+ev+ +e +HnH+l+
  LOC_Os02g33750.2  64 EFYRYYAWKLGFSVRREYANKSRKTGEITSRKFVCSREGFKAPDKRT-NHTRTPQPDTRTGCHANLVIRRKNdTSKYEVYAFEAQHNHPLF 153
                       6*******************************************999.**********************9999***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.4E-2664153IPR004330FAR1 DNA binding domain
PROSITE profilePS508118.75479153IPR003657WRKY domain
PfamPF105513.7E-17278362IPR018289MULE transposase domain
PROSITE profilePS5096610.188549585IPR007527Zinc finger, SWIM-type
SMARTSM005754.5E-7560587IPR006564Zinc finger, PMZ-type
PfamPF044344.8E-5561582IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MSSPSPEPPP NPTPVPPPPP PAPSGNTAVE DSEAGPCIPR LQAATGDYTP WLGQEFASEH  60
EAYEFYRYYA WKLGFSVRRE YANKSRKTGE ITSRKFVCSR EGFKAPDKRT NHTRTPQPDT  120
RTGCHANLVI RRKNDTSKYE VYAFEAQHNH PLFIPSCANP LQKKLSDVQS SDADNSASVT  180
HASEPDSRNS ILAEKTIKSP EISQRSLHTR RQREIKCGEA SALLNYLQDQ CRADPLFYHA  240
VQLDAEDKVT NIFWADAKMV IDFGQFGDVV SFDIVPRNNM NLRPFASFVG FNNYGETVLL  300
GMALMYDDSL ESFQWLFETF LHAMSGQAPR TVFSRQDAIV SKAISLVMPD TCHAICTWNL  360
KQSAKSNLNH LIRGDCGFIK EFKACINDYE EEVEFFTAWE AMISKYNLHN NVWLQKVFEE  420
KEKWARPYTK WIFSAGMKNT QLNERLHSDV RDYLKSDVDI ISFLKHLKKL VNDRRYIELE  480
VEFSSRLKLP DFKIRAPILR QASEAYTGMI FQLFQEEYEE FQSAYIVTRD ESGPSREYIV  540
AILEKERRYK VHGNPCEQTV TCSCRKFETL GFLCSHALKV LDTMDIKYMP DRYILKRWTK  600
YGRCLTAPQV EGRKVQADTT LEFSSRYEYL CPVYVRLVAR ASECEESYRV LDQCSVELGK  660
KIEEILQKQT SIDASAPQSD IEDVTISLSA NGTDNESERA LDYSSSTRPK RRKKKGRNAK  720
SQRKSCIEKG LQKTKKVQPE QSPIQYTMLD AAQPGNVLFQ GLDISNPFPM GQLNYGGVQS  780
QPGLCPSLPT VSRELGFAAY LSQPSSNNQH NQQGL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1030300.0callus| flower| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329768160.0
Expression AtlasQ0E0K7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g33750.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g33750
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667980.0AK066798.1 Oryza sativa Japonica Group cDNA clone:J013075G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627311.10.0protein FAR1-RELATED SEQUENCE 7 isoform X2
TrEMBLQ0E0K70.0Q0E0K7_ORYSJ; Os02g0542200 protein (Fragment)
STRINGOS02T0542200-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-86FAR1-related sequence 5