PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g33750.1 | ||||||||
Common Name | Os02g0542200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 859aa MW: 97882.5 Da PI: 7.6032 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 92.5 | 5.5e-29 | 64 | 153 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY+ YA ++GFsvr+++ +ks+++geit+r+fvCs+eg+++++k++ +++r++++ trtgC+a+l++++++ ++k+ev+ +e +HnH+l+ LOC_Os02g33750.1 64 EFYRYYAWKLGFSVRREYANKSRKTGEITSRKFVCSREGFKAPDKRT-NHTRTPQPDTRTGCHANLVIRRKNdTSKYEVYAFEAQHNHPLF 153 6*******************************************999.**********************9999***************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.8E-26 | 64 | 153 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50811 | 8.754 | 79 | 153 | IPR003657 | WRKY domain |
Pfam | PF10551 | 4.0E-17 | 278 | 362 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.188 | 549 | 585 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.5E-7 | 560 | 587 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 5.0E-5 | 561 | 582 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 859 aa Download sequence Send to blast |
MSSPSPEPPP NPTPVPPPPP PAPSGNTAVE DSEAGPCIPR LQAATGDYTP WLGQEFASEH 60 EAYEFYRYYA WKLGFSVRRE YANKSRKTGE ITSRKFVCSR EGFKAPDKRT NHTRTPQPDT 120 RTGCHANLVI RRKNDTSKYE VYAFEAQHNH PLFIPSCANP LQKKLSDVQS SDADNSASVT 180 HASEPDSRNS ILAEKTIKSP EISQRSLHTR RQREIKCGEA SALLNYLQDQ CRADPLFYHA 240 VQLDAEDKVT NIFWADAKMV IDFGQFGDVV SFDIVPRNNM NLRPFASFVG FNNYGETVLL 300 GMALMYDDSL ESFQWLFETF LHAMSGQAPR TVFSRQDAIV SKAISLVMPD TCHAICTWNL 360 KQSAKSNLNH LIRGDCGFIK EFKACINDYE EEVEFFTAWE AMISKYNLHN NVWLQKVFEE 420 KEKWARPYTK WIFSAGMKNT QLNERLHSDV RDYLKSDVDI ISFLKHLKKL VNDRRYIELE 480 VEFSSRLKLP DFKIRAPILR QASEAYTGMI FQLFQEEYEE FQSAYIVTRD ESGPSREYIV 540 AILEKERRYK VHGNPCEQTV TCSCRKFETL GFLCSHALKV LDTMDIKYMP DRYILKRWTK 600 YGRCLTAPQV EGRKVQADTT LEFSSRYEYL CPVYVRLVAR ASECEESYRV LDQCSVELGK 660 KIEEILQKQT SIDASAPQSD IEDVTISLSA NGTDNESERA LDYSSSTRPK RRKKKGRNAK 720 SQRKSCIEKG LQKTKKVQPE QSPIQYTMLD AAQPGNVLFQ GLDISNPFPM GQLNYGGVQS 780 QPGLCPSLPT VSRELGFAAY LSQPSSNNQH NQQNWPSVED QINFSNSYQS VIEATKNSHL 840 PGYIHQQHVQ AMLRSMTS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.103030 | 0.0 | callus| flower| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32976816 | 0.0 | ||||
Expression Atlas | Q0E0K7 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g33750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g33750 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066798 | 0.0 | AK066798.1 Oryza sativa Japonica Group cDNA clone:J013075G03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627310.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7 isoform X1 | ||||
TrEMBL | Q0E0K7 | 0.0 | Q0E0K7_ORYSJ; Os02g0542200 protein (Fragment) | ||||
STRING | OS02T0542200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-86 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g33750.1 |