PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g33430.2
Common NameP0508B05.21-1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family E2F/DP
Protein Properties Length: 417aa    MW: 45717.1 Da    PI: 4.5153
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g33430.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.25e-2791156171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       r+++sL+llt+kf++ll+++++gi++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn+irwkg
  LOC_Os02g33430.2  91 RYDSSLGLLTKKFINLLKQAPDGILDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKTLKNRIRWKG 156
                       6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.6E-2989158IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.0E-3591156IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.18E-1891154IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.0E-2493156IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.81E-49166272No hitNo description
SuperFamilySSF1440741.05E-34169272No hitNo description
PfamPF164211.9E-33171270IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MFLITFSDYK IQAILSSQQK RKAPEESDVA ESSDCMITSP GFAVSPMLTP VSGKAVKTSK  60
SKTKNNKAGP QTPTSNVGSP LNPPTPVGTC RYDSSLGLLT KKFINLLKQA PDGILDLNNA  120
AETLEVQKRR IYDITNVLEG IGLIEKTLKN RIRWKGLDDS GVELDNGLSA LQAEVENLSL  180
KEQALDERIS DMREKLRGLT EDENNQRWLY VTEDDIKGLP CFQNETLIAI KAPHGTTLEV  240
PDPDEAGDYL QRRYRIVLRS TMGPIDVYLV SQFDEKFEDL GGGATPSGHA NVPKHQPTEV  300
FNTTNAGVGQ CSNSVAVDNN IQHSQTIPQD PSASHDFGGM TRIIPSDIDT DADYWLISEG  360
DVSITDMWKT APDVQWDESL DTDVFLSEDV RTPSSHNQQP SAVGGPQMQV SDMHKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A9e-2483157274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.4230.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329787060.0
Expression AtlasQ6ETV7-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Most abundant in early S phase. Decreased expression during the passage into G2. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543}.
UniprotTISSUE SPECIFICITY: Highly expressed in the shoot apical meristem, emerging leaf primordia, and vascular tissues of young leaf primordia. Expressed in flowers, in epidermis and cortex of hypocotyls, and at lower levels in leaves. {ECO:0000269|PubMed:11108847, ECO:0000269|PubMed:11889041}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Regulates gene expression both positively and negatively. Activates the expression of E2FB. Involved in the control of cell-cycle progression from G1 to S phase. Stimulates cell proliferation and delays differentiation. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:15377755, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:19662336}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g33430.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g33430
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0417250.0AB041725.1 Oryza sativa OsE2F1 mRNA for E2F homolog, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623378.10.0transcription factor E2FB
SwissprotQ9FNY01e-124E2FA_ARATH; Transcription factor E2FA
TrEMBLQ6ETV70.0Q6ETV7_ORYSJ; E2F homolog
TrEMBLQ9FRZ90.0Q9FRZ9_ORYSA; E2F homolog
STRINGOS02T0537500-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-121E2F transcription factor 3
Publications ? help Back to Top
  1. Magyar Z, et al.
    Arabidopsis E2FA stimulates proliferation and endocycle separately through RBR-bound and RBR-free complexes.
    EMBO J., 2012. 31(6): p. 1480-93
    [PMID:22307083]