PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g32590.2
Common NameHSF07, HSFA3, LOC4329526, Os02g0527300, P0458B05.23, P0475F05.3
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 451aa    MW: 49960 Da    PI: 4.7012
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g32590.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.36.8e-35681602103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y+++ ++el+ +isw + gnsfvv+d++ fa++vLp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +++k+ll
  LOC_Os02g32590.2  68 FLSKTYDLVCEPELDGVISWGHAGNSFVVWDPSAFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEDFLRHSKHLL 151
                       9****************************************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       +ki r++s+
  LOC_Os02g32590.2 152 KKIVRRRSS 160
                       *****9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.2E-5564157IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3364157IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.6E-3864157IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-166891IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.5E-3168157IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-16106118IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340107131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-16119131IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MDHNTDPPPT TMVDAAAALL LEPKLEGYDD DGGGEPLQPA PFVSPLDQLM QPPRPLEALL  60
QGPQLPPFLS KTYDLVCEPE LDGVISWGHA GNSFVVWDPS AFARDVLPHH FKHNNFSSFV  120
RQLNTYGFRK VHADRWEFAH EDFLRHSKHL LKKIVRRRSS PTQQSGLQPG SSGESGLDPE  180
LNTLRREKSA LLQEVTRLKQ EHLQTIEQMS TLNQRLESAE DRQKQMVSFL AKLLQNPTFL  240
RQLKMHRQQK EIDSTRVKRK FLKHVPHGNI DSENIGLDGI EAPDDIGALV QGFDTQEELE  300
LGSGVELLEI PPASGPRGQD PTIGRSKGKN VLSPGLDATS SEADCLGSFS DNMGMLSDSM  360
LQTAGKLMDA DDDERIWGVD ASSALQSSCS GTSQQAYGSL VSDPYLMEMA NKPEKFWELD  420
FQALDDGDLQ LDKCVIDDPA LQQQRGNMNS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-246016011123Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.237780.0callus| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329871430.0
Expression AtlasQ6H6Q7-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g32590.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g32590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019340.0AK101934.1 Oryza sativa Japonica Group cDNA clone:J033073P11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623061.10.0heat stress transcription factor A-3
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A0D9YT220.0A0A0D9YT22_9ORYZ; Uncharacterized protein
STRINGORUFI02G19790.10.0(Oryza rufipogon)
STRINGOS02T0527300-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-70heat shock transcription factor A3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Baniwal SK, et al.
    Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors.
    J. Biosci., 2004. 29(4): p. 471-87
    [PMID:15625403]
  3. Guo J, et al.
    Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.
    J Genet Genomics, 2008. 35(2): p. 105-18
    [PMID:18407058]
  4. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  5. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]