PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g32140.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 261aa    MW: 26408.7 Da    PI: 10.3516
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g32140.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-2086135255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp   + + +r++lg+f+tae Aa+a++ a+++++g
  LOC_Os02g32140.1  86 HYRGVRRRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEAAAAAYDDAALRFKG 135
                       7********.**********9...3.35************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.4E-3285144IPR001471AP2/ERF domain
PfamPF008471.3E-1386135IPR001471AP2/ERF domain
CDDcd000181.14E-1686144No hitNo description
SMARTSM003804.7E-3486149IPR001471AP2/ERF domain
PROSITE profilePS5103225.13286143IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-2286144IPR016177DNA-binding domain
PRINTSPR003671.9E-118798IPR001471AP2/ERF domain
PRINTSPR003671.9E-11109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MSSRQPIGSG GGGAPPDWHD VEPQWQPVDD VVTVAAAAAY LAAPAGATLS SESADRRWRP  60
VGPSAAAAAA ALQAVEAQGA AAAERHYRGV RRRPWGKWAA EIRDPNKAAR VWLGTFDTAE  120
AAAAAYDDAA LRFKGAKAKL NFPERVRGRT GQGGFLVSPA VPRPPPHGVP APAPAVAPAP  180
FPDLIQYARL LRSGEDAAAA AAVAGIAATA APAAQILDFA AQRLVGVSPA MAPRPPSTLP  240
TTTTAASSPS AWPHGGGHGS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2385146466ATERF1
3gcc_A2e-2385146466ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.560790.0leaf| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166311480.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g32140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g32140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8313300.0CT831330.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126O21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623923.11e-177ethylene-responsive transcription factor ERF110
TrEMBLA0A0E0G7G41e-176A0A0E0G7G4_ORYNI; Uncharacterized protein
STRINGONIVA02G20490.11e-177(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2696255
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-26related to AP2 6l