PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g32040.1 | ||||||||
Common Name | Os02g0520000, OSNPB_020520000, P0461D06.33 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 25158.2 Da PI: 4.5898 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 39 | 88 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +gr++AeIrdp + + r++lg+f+taeeAa a+++a++ ++g LOC_Os02g32040.1 39 RYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARTIRG 88 588******.**********843...4***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.56E-26 | 38 | 97 | No hit | No description |
PROSITE profile | PS51032 | 21.285 | 39 | 96 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-10 | 39 | 88 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-28 | 39 | 96 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-21 | 39 | 96 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.2E-31 | 39 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDFYFFSSSA PAPEKKTRRQ QQQQQQREQE GGGGGNEARY LGVRRRPWGR YAAEIRDPAT 60 KERHWLGTFD TAEEAAVAYD RAARTIRGAA ARTNFAYPDL PPGSSLTPYL SPDLSTNDLH 120 RHYYGAGAGA DTQTAAALPA PAQPAHGGDA QEMAYGGGGG QNVGGVFDVV GGGGGAAWCD 180 ASELEFGGYD DAGASAAAAA VYFEEGYVHS PMFSPMPAAD EVAADGFQLG GSSSSSYYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 32 | 95 | 7 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6H4L1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g32040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g32040 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005845 | 0.0 | AP005845.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0461D06. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879251.1 | 1e-172 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | Q6H4L1 | 1e-170 | Q6H4L1_ORYSJ; Branched silkless 1-like | ||||
STRING | OS02T0520000-00 | 1e-171 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28160.1 | 4e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g32040.1 |