PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g31890.1
Common NameOs02g0518500, OsJ_06922, OSNPB_020518500, P0461D06.10
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 493aa    MW: 54491.9 Da    PI: 7.3145
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g31890.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-056688123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y C+ C+k F r  nL+ H r H
  LOC_Os02g31890.1 66 YICEVCHKGFQRDQNLQLHRRGH 88
                      89*******************88 PP
2zf-C2H210.90.0014142164123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC  C+k +  +s+ k H + +
  LOC_Os02g31890.1 142 WKCDRCSKKYAVQSDWKAHTKIC 164
                       58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.28E-66588No hitNo description
SMARTSM003550.0386688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7416688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM0035552107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.28E-6137162No hitNo description
SMARTSM00355230142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MSHTSEEESL NNLQQQPKLE ACAAGSSKGD TVMPVVKKRR GHPGNPDPDV EVVALSPKTL  60
LATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRSST EAKKKVYVCP EITCPHHDAT  120
RALGDLTGIK KHYSRKHGEK KWKCDRCSKK YAVQSDWKAH TKICGTKEYR CDCGTIFSRK  180
DSFITHRAFC DALAEDTSRV NHSLATMVGS LHGQQQDMFS HGVPSFSSSP TDMIANLASN  240
DHNSDSHLRS LSPYALVTRN TTLFSNQISP KESGFPLDGS VTSYPYMSMN SPYMSATALL  300
QKAAEMGAKT SQDPISPLLL KSFPNNLTSS RDHMNISSRS QGDSLGNSTV NSDCMKTTED  360
ENSYMIGRGN ILINAPWSSG IMRPGTVPLI GLMNHPFSMR EEKDNPSIFP ENQTQHNRQD  420
NISGVVDADA GLTQDFLGLG GSGTLDMSSE TYNADVTALS YSDEQEKPQE HIYSYHQSSL  480
DPTALEKPIW DS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-33138201366Zinc finger protein JACKDAW
5b3h_F7e-33138201366Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.350125e-71callus| flower| leaf| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329793085e-71
Expression AtlasQ6H4M3-
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g31890.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g31890
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058450.0AP005845.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0461D06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879352.10.0protein indeterminate-domain 2-like
SwissprotQ8GYC11e-102IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A0E0NFJ70.0A0A0E0NFJ7_ORYRU; Uncharacterized protein
TrEMBLQ6H4M30.0Q6H4M3_ORYSJ; Os02g0518500 protein
STRINGORUFI02G19290.10.0(Oryza rufipogon)
STRINGOS02T0518500-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-105indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]