PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g30700.1 | ||||||||
Common Name | LOC107275548, Os02g0511200, OsJ_06874, OSJNBa0001A11.14, OSNPB_020511200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 277aa MW: 29091.8 Da PI: 6.3675 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.7 | 1.3e-13 | 176 | 219 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE+ ++++++ +G+g+Wk+ a+++ k+++ q+ s++qk+ LOC_Os02g30700.1 176 WTREEHSQFLHGISTYGKGNWKALASEFVKTKSSTQIASHYQKF 219 ******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.1 | 28 | 78 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.74E-7 | 30 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 5.494 | 32 | 76 | IPR017877 | Myb-like domain |
CDD | cd00167 | 2.34E-4 | 32 | 72 | No hit | No description |
PROSITE profile | PS51294 | 12.687 | 168 | 224 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.74E-14 | 169 | 225 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.8E-11 | 171 | 221 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.2E-8 | 172 | 222 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-9 | 175 | 219 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-10 | 176 | 218 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.60E-8 | 176 | 219 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MPTDDATATG NGDGAAPRPA AAEPAAPLSS VWTRRDEKLL EMLLWRWQLD PHWDRLAAEL 60 GGKTATQVFD RYVCLADELR LVMAAPAVDT PPAWDVQDER EAAVAPLPGL EADAAAGAGE 120 SAEVTAIGIA AAASPNAAAT SAPTIGGGVV LKSRELKNPR KTRMAGGGPR KKAEMWTREE 180 HSQFLHGIST YGKGNWKALA SEFVKTKSST QIASHYQKFC IREEKRRLSK CKRASIHDIV 240 SPTTTTSAPE SAGAGPSAPP CALIESGALI AGDDDA* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6K786 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g30700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g30700 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004861 | 0.0 | AP004861.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0001A11. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624449.1 | 0.0 | transcription factor SRM1 | ||||
TrEMBL | Q6K786 | 0.0 | Q6K786_ORYSJ; Myb-like protein | ||||
STRING | ORUFI02G18860.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14418 | 18 | 25 | Representative plant | OGRP17847 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-17 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g30700.1 |
Entrez Gene | 107275548 |