PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g29640.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 652aa    MW: 75670.9 Da    PI: 7.9249
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g29640.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.91.6e-1875159589
              FAR1   5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                       +YAk  GFsvrk++ k++  +gei++r+fvCs++ +re ++ + te +r++ra tr+gC akl++++++ +g w v++++++H+ el
  LOC_Os02g29640.1  75 DYAKGKGFSVRKNNLKRK--DGEIIWRQFVCSCKEYRELKHFErTEWKREPRALTRCGCLAKLEIERNEqKGMWFVKEFDNQHTLEL 159
                       7************99887..9****************9998775788999*****************999*************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1775159IPR004330FAR1 DNA binding domain
PfamPF105516.2E-12289338IPR018289MULE transposase domain
PROSITE profilePS509668.815522559IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MATAKKLGEK DVAYLSVLPF MLLRILHSQV WLTISRLMDA RGNRRRIVER GIEFEQSGSC  60
DSILLHALQG LITTDYAKGK GFSVRKNNLK RKDGEIIWRQ FVCSCKEYRE LKHFERTEWK  120
REPRALTRCG CLAKLEIERN EQKGMWFVKE FDNQHTLELA NPDHDAFLGV HRVMTDSKKA  180
QAIELRMSGL RPFQIMEVME NNHDESEEVS FVMKDLYNFF TRYEMKNIKG RDAEDVLKYL  240
TRKQEEDPEF FFKYTTDEEG RLRNVFWADV ESRLDYAAFG GVVIFDSTYR LLETFLEAIR  300
QVHPKSLITD GDLAMAKAIS KVMPGAYHRL CTWHIEENMS RHLRKPKLDE LRKLIYESMD  360
EEEFERRWAD FKENGGTGNG QWIALMYRLR EKWAATYTDV KYLLGMRSNQ HSESLNSKLH  420
TLLKRNMSLM CLVKHVKLCI QRLRKKEAQL DAKCTNSIPF CRIDADPLEK DTARIFTTIV  480
FKKVRAQIWL IAGLEVISGT NQDGSSLYVV GLKDDNEVWD EVRVTFKGQA LEGVECHCRK  540
MECEDIPCSH IFVVLKFLGF DTIPRCCVVD RWTMGAMAAF RSDRNTDPNV WSEHMVRFRS  600
LRNLGSDARN PEQTEKAMDF LNGILDKGSS SHENIVAGDF APMPTHFSSS N*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.801530.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976024520.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g29640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g29640
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056300.0AP005630.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0021C10.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611098.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLQ7XVP70.0Q7XVP7_ORYSJ; OSJNBa0050F15.2 protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-60FAR1-related sequence 5