PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g29550.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 197aa MW: 22840.8 Da PI: 8.9251 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39 | 2e-12 | 73 | 114 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ gt eeAa+++++a+ LOC_Os02g29550.3 73 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 114 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.269 | 48 | 127 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-5 | 72 | 129 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-6 | 72 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-8 | 72 | 117 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-7 | 75 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MLLNTCYLHW QRWFCLIKCT FLLQTKNSDV LLESSNGSDS LKEEKNHYYP GKEIKRRKRH 60 RRKQYVDQEP CIMRGVYFKN MKWQAAIKVD KKQIHLGTVG TQEEAARLYD RAAFMCGREP 120 NFELSEEEKK ELQNYTWKDF LDMTRDTITS KKQRKVGLIR RNKTDSLVGQ SDGDTEMING 180 GGSSHSEDGD AETSAS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.14087 | 0.0 | callus| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297721218 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g29550.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g29550 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067156 | 0.0 | AK067156.1 Oryza sativa Japonica Group cDNA clone:J013098A10, full insert sequence. | |||
GenBank | CT829643 | 0.0 | CT829643.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114K05, full insert sequence. | |||
GenBank | CT841725 | 0.0 | CT841725.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105I17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626905.1 | 1e-125 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_015626906.1 | 1e-125 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A0D3F5F1 | 1e-125 | A0A0D3F5F1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YSK4 | 1e-125 | A0A0D9YSK4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0G6W6 | 1e-125 | A0A0E0G6W6_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NF71 | 1e-125 | A0A0E0NF71_ORYRU; Uncharacterized protein | ||||
STRING | OGLUM02G17700.1 | 1e-125 | (Oryza glumipatula) | ||||
STRING | ORUFI02G18290.1 | 1e-125 | (Oryza rufipogon) | ||||
STRING | OBART02G17450.1 | 1e-125 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 2e-46 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g29550.3 |