PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g29550.1 | ||||||||
Common Name | LOC9271519, Os02g0499000, OSNPB_020499000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 25330.5 Da PI: 9.3184 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.7 | 2.5e-12 | 99 | 140 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ gt eeAa+++++a+ LOC_Os02g29550.1 99 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 140 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.269 | 74 | 153 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-6 | 98 | 141 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-8 | 98 | 143 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.1E-5 | 98 | 155 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-7 | 101 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MVSLRRRRLL GLCSGKDSLP VDFPKPSDNE NSVEVAHPNI KPFSVHPLPL TKNSDVLLES 60 SNGSDSLKEE KNHYYPGKEI KRRKRHRRKQ YVDQEPCIMR GVYFKNMKWQ AAIKVDKKQI 120 HLGTVGTQEE AARLYDRAAF MCGREPNFEL SEEEKKELQN YTWKDFLDMT RDTITSKKQR 180 KVGLIRRNKT DSLVGQSDGD TEMINGGGSS HSEDGDAETS AS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.14087 | 0.0 | callus| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297721218 | 0.0 | ||||
Expression Atlas | B7ED44 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g29550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g29550 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067156 | 0.0 | AK067156.1 Oryza sativa Japonica Group cDNA clone:J013098A10, full insert sequence. | |||
GenBank | CT829643 | 0.0 | CT829643.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114K05, full insert sequence. | |||
GenBank | CT841725 | 0.0 | CT841725.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105I17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626905.1 | 1e-167 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_015626906.1 | 1e-167 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | B7ED44 | 1e-166 | B7ED44_ORYSJ; Os02g0499000 protein | ||||
TrEMBL | I1P0M0 | 1e-166 | I1P0M0_ORYGL; Uncharacterized protein | ||||
STRING | OS02T0499000-01 | 1e-166 | (Oryza sativa) | ||||
STRING | ORGLA02G0152600.1 | 1e-166 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7516 | 35 | 45 | Representative plant | OGRP8022 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.2 | 9e-47 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g29550.1 |
Entrez Gene | 9271519 |