PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g29340.1
Common NameHSF06, HSFA5, LOC4329405, Os02g0496100, P0040H05.33
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 476aa    MW: 52884.7 Da    PI: 5.1743
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g29340.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.42.6e-34221132101
                       HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
      HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                       Fl k+ye+++d++++ ++sws ++  sfvv+++ efa ++Lp yFkhsnf+SF+RQLn+YgF+k++ e+         weF++++F kg+k+l
  LOC_Os02g29340.1  22 FLLKTYEMVDDPSTDAVVSWSdASDASFVVWNHPEFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPER---------WEFANEYFIKGQKHL 105
                       9********************66679****************************************999.........*************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  94 lekikrkk 101
                       l++i+r+k
  LOC_Os02g29340.1 106 LKNIHRRK 113
                       ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.44E-3318112IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.6E-3618112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.3E-5918112IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.1E-3022112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-192245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-196173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.7E-197486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEVAAGARGG GAGGGGGGPA PFLLKTYEMV DDPSTDAVVS WSDASDASFV VWNHPEFAAR  60
LLPAYFKHSN FSSFIRQLNT YGFRKIDPER WEFANEYFIK GQKHLLKNIH RRKPIHSHSH  120
PPGALPDNER AIFEDEIERL SREKSNLQAD LWKSKQQQSG TMNQIEDLER RVLGMEQRQT  180
KMIAFLQQAS KNPQFVNKLV KMAEASSIFT DAFNKKRRLP GLDYSIENTE TTSFYDDHSS  240
TSKQETGNLL NQHFSDKLRL GLCPAMTESN IITLSTQSSN EDNRSPHGKH PECDMMGREC  300
LPLVPQMMEL SDTGTSICPS KSSCFAPPIS DEGLLTCHLS LTLASCSMDV DKSQGLNANG  360
TTIDNPTEAA TATMEKDDTI DRSFDDNQKK SADSRTADAT TPRADARVAS EAPAAPAAVV  420
NDKFWEQFLT ERPGCSETEE ASSGLRTDTS REQMENRQAY DHSRNDREDV EQLKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-22911217129Heat shock factor protein 1
5d5v_B1e-22911217129Heat shock factor protein 1
5d5v_D1e-22911217129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.592300.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329822330.0
Expression AtlasQ6K6S5-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g29340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g29340
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0656430.0AK065643.1 Oryza sativa Japonica Group cDNA clone:J013035J03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622576.10.0heat stress transcription factor A-5
SwissprotQ6K6S50.0HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLA0A0E0G6U30.0A0A0E0G6U3_ORYNI; Uncharacterized protein
TrEMBLA2X5200.0A2X520_ORYSI; Uncharacterized protein
STRINGOS02T0496100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Representative plantOGRP97161012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-107HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Baniwal SK, et al.
    Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors.
    J. Biosci., 2004. 29(4): p. 471-87
    [PMID:15625403]
  3. Guo J, et al.
    Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.
    J Genet Genomics, 2008. 35(2): p. 105-18
    [PMID:18407058]