PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g28180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 493aa MW: 55918.2 Da PI: 4.8989 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 28.9 | 3.7e-09 | 102 | 142 | 1 | 42 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42 +fYn+YA++vGFsvrk + +++ +g+ ++ +vCs+eg +e LOC_Os02g28180.1 102 NFYNSYARRVGFSVRKCHVNYR-ADGTLSSKYMVCSNEGGDE 142 6****************99987.8999***********9776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.4E-6 | 102 | 142 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.0E-30 | 218 | 312 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MDERGVGDEP VLMGEVQQVG ESNPTLSEAS QRTGFTFNSV GHHAMGESSN CNLEGHNVVF 60 RSDREKSEQV TQSNIKATNQ NAPCEQVPKV GMTFQSEDDA YNFYNSYARR VGFSVRKCHV 120 NYRADGTLSS KYMVCSNEGG DENVPFLQMD CNNFIGRERK KYLETQDAQT LLEYLDNKQA 180 EDPSFFYSVQ LDKEDGRICN FFWTDGQAIA DYACFGDVLS IDTTFQTNKS EMPFTPIIGA 240 NHHRQTIIFG AALLFDESAD SFVWLFRNFL KAMSGKQPET IFTDQCAAMA KAIMIVFLNS 300 SHCLCLWHIY QNAAKHLSHV ISNNPNFLHD FKRCVYEERS VAHFNFNWQK LISDYHLEDN 360 SWIQNLYDLR EKWATIQKVV TVDHSKDETR VTFNSVDMNI SCSCRKYTCL GEETTQPSNI 420 NIAGASQPTV QEPLDSNIVM PFGDISRMFV PPIRGEFTNL LFQAHHETTA AASASWRLEF 480 ENQDPNSSTS YD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.23302 | 1e-119 | leaf| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297722166 | 1e-119 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g28180.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g28180 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004302 | 0.0 | AP004302.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1122_H01. | |||
GenBank | AP005820 | 0.0 | AP005820.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0091C16. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624965.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A287P1D7 | 1e-121 | A0A287P1D7_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287P1H4 | 1e-121 | A0A287P1H4_HORVV; Uncharacterized protein | ||||
STRING | MLOC_79984.1 | 1e-114 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-60 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g28180.1 |