PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g25830.1
Common NameLOC107275417, Os02g0455900, OSJNBa0008C07.36, OSJNBa0063K04.12
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 273aa    MW: 29869.4 Da    PI: 7.3141
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g25830.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.3e-1529125191
                       EEEE-..-HHHHT.T-EE--HHH.HTT......---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                B3   1 ffkvltpsdvlks.grlvlpkkfaeeh......ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       f kvl+psdv+    +lv+p +++ +       + ++ + + +++ed   +g+ W +++  +k+++ + ltkGW  +++++gL++gD+v F +
  LOC_Os02g25830.1  29 FGKVLMPSDVSWDtEQLVIPDEHVGKLldmvvmNRPEGGFFVVVVEDgeVTGKLWLFRY--WKRDDVHCLTKGWGCYAREKGLRAGDTVSFFH 119
                       6799******977699********9999999976666667777888866677*******..******************************97 PP

                       -SSSEE. CS
                B3  85 dgrsefe 91 
                       +   +++
  LOC_Os02g25830.1 120 ST-ACGR 125
                       65.4443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-1723130IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-1827132IPR015300DNA-binding pseudobarrel domain
CDDcd100173.09E-1828132No hitNo description
SMARTSM010190.002429133IPR003340B3 DNA binding domain
PfamPF023622.9E-1129127IPR003340B3 DNA binding domain
PROSITE profilePS508639.07930134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAASPPLPTS IDGGQVLDDM EVVEMKYLFG KVLMPSDVSW DTEQLVIPDE HVGKLLDMVV  60
MNRPEGGFFV VVVEDGEVTG KLWLFRYWKR DDVHCLTKGW GCYAREKGLR AGDTVSFFHS  120
TACGRFFICC RCTCMSFLSL PTTSHRIHGS SVLPQPRAAQ EAHHPFSGHA TLCLGNKASD  180
HSAPARHATA SLGCAAAQPP QVPPTPTPRR RRRSMMVHPE PPEHTTDGMP VILESMALVS  240
TPPVAKRVRL FGVYIDVPPL RPGGEATQDF NP*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6K3B1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g25830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g25830
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056080.0AP005608.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0008C07.
GenBankAP0056960.0AP005696.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0063K04.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624416.10.0putative B3 domain-containing protein Os02g0455900
SwissprotQ6K3B10.0Y2559_ORYSJ; Putative B3 domain-containing protein Os02g0455900
TrEMBLA0A0E0NEE60.0A0A0E0NEE6_ORYRU; Uncharacterized protein
STRINGOS02T0455900-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181381010
Representative plantOGRP1446623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.19e-13B3 family protein