PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g25470.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 275aa    MW: 31562.3 Da    PI: 8.3052
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g25470.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.12e-2537126190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +f+  Y+ ++GF+vr+++++ksk +g it++++vCs+eg+r+ +k++ ++++r+ra+trtgCka++ ++ ++  + + v++l+leHnHel+
  LOC_Os02g25470.1  37 EFWTYYGGRTGFDVRINYENKSKVDGVITSARYVCSNEGYRAIDKRD-HNTKRPRAKTRTGCKARIGITVDReVDDYSVYDLVLEHNHELQ 126
                       69******************************************999.99*******************99989***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-2037126IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MANDSNSNHH NSNSTNMIPS WIPQFGMKFK STKEAWEFWT YYGGRTGFDV RINYENKSKV  60
DGVITSARYV CSNEGYRAID KRDHNTKRPR AKTRTGCKAR IGITVDREVD DYSVYDLVLE  120
HNHELQLPST CHLMPSQRKI SSLQAFEIET MDDSGIGPKA AHELASRQVG GSVNLGYTRR  180
DLKNHLRTKR QRELMYGEAG SMLKYFQDKV AENTSFHYAL QLDCEEQITN IFWADAKMII  240
DYAQFGDVVT FDTTFGTNKE YRPFGVFVGF NHFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g25470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g25470
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056540.0AP005654.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0080M22.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151343.11e-135protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020151344.11e-135protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB8BE171e-177B8BE17_ORYSI; Uncharacterized protein
STRINGTraes_2AS_BB6B8AC48.21e-151(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-51FAR1-related sequence 5