PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g23823.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 104aa MW: 11551.1 Da PI: 8.8704 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.1 | 2.7e-07 | 40 | 68 | 1 | 29 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk 29 r++ + rE+ RRdr+N+ f+eL + l k LOC_Os02g23823.2 40 RKVQKADREKMRRDRLNEQFQELGSTLGK 68 5778899****************998866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.29E-5 | 32 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-4 | 39 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.8E-5 | 40 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MDPRSSQAQE DGFFHPRDGA CPADSSGKTE CKTQGSIATR KVQKADREKM RRDRLNEQFQ 60 ELGSTLGKAQ LFVSNRLLPP SHCKCSCGFP CPTFDRPSYL KQL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g23823.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g23823 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT832630 | 1e-172 | CT832630.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA020B12, full insert sequence. | |||
GenBank | CT832631 | 1e-172 | CT832631.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA021A12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626280.1 | 2e-39 | transcription factor bHLH121 isoform X1 | ||||
TrEMBL | A0A0E0JZD8 | 6e-39 | A0A0E0JZD8_ORYPU; Uncharacterized protein | ||||
TrEMBL | Q67U21 | 4e-38 | Q67U21_ORYSJ; BHLH transcription factor | ||||
STRING | OS02T0433600-01 | 6e-39 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.2 | 7e-07 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g23823.2 |