PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g21685.1 | ||||||||
Common Name | OSJNBa0073A18.35 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 148aa MW: 15305.1 Da PI: 9.3995 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 31.2 | 2.7e-10 | 63 | 116 | 2 | 55 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 ++lL e+A a+++g++ a +lL+ l+ ++p+gd+ qRl+a+++ AL++ + LOC_Os02g21685.1 63 RQLLSEAAAAIANGNHIVAASLLSALKLSVNPQGDAEQRLVAMMVAALSSCVGT 116 789**********************************************98866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 8.59 | 36 | 147 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.3E-8 | 63 | 116 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MTSDWGDTIQ RLNSVTAASS PSLPLLTVVN NTALLARSPT NSSSSTASSS ASSSPPISAA 60 SSRQLLSEAA AAIANGNHIV AASLLSALKL SVNPQGDAEQ RLVAMMVAAL SSCVGTSPSQ 120 HLADLYIGVG RRRWSEDRER RKERLDS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.49702 | 1e-137 | callus| flower| leaf| panicle| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37990398 | 1e-137 | ||||
Expression Atlas | Q6ER63 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g21685.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g21685 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005612 | 0.0 | AP005612.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0073A18. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623156.1 | 1e-46 | scarecrow-like protein 8 | ||||
TrEMBL | Q6ER63 | 7e-96 | Q6ER63_ORYSJ; Scarecrow transcriptional regulator-like protein | ||||
STRING | OGLUM02G28580.1 | 1e-46 | (Oryza glumipatula) |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g21685.1 |