PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g18660.1
Common NameLOC4329046, OJ1756_H07.29, Os02g0288200, OSNPB_020288200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GeBP
Protein Properties Length: 579aa    MW: 61524.2 Da    PI: 5.8803
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g18660.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573422.6e-13203292798
            DUF573   7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 
                       w+ +De+ +L  l+   +++g++    +++++  v +s++ k  k s++ eK+rrLK++++   kk+++g +   +ke+d  +++ls+ iWg+
  LOC_Os02g18660.1 203 WTTDDEVKILEVLVAHFKSHGTQ--LKVEGIIAAVGDSLERKSIKySDMYEKVRRLKQRYEATAKKVEHGGDLP-AKEDDLRMYQLSSEIWGK 292
                       ***************99999965..5799**********98865538***********************9965.567889**********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.6E-19203291IPR007592Protein of unknown function DUF573
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MARKRRAPTP PPPPPPPPEA ESSADSSGEE EEEEEEEEEE RESPVAPPPQ KPSGRGAASS  60
DEEEEEEEDS DTDTYAQGFQ LRKVGGGDEE GEEVEGDSSE SEPEPEPVKK ESAKKAKAEA  120
KKKRAAPEPA PSGKAKKAKP EKSSSAAAPE PAPSSGKSKK AAKAEAAKAA AAEPAPSTGK  180
VSKYNLAPEP SPSSKSGKAL SRWTTDDEVK ILEVLVAHFK SHGTQLKVEG IIAAVGDSLE  240
RKSIKYSDMY EKVRRLKQRY EATAKKVEHG GDLPAKEDDL RMYQLSSEIW GKNAKDAGNS  300
SKNKKGQAKK DKVSGDSKEA AKEDKVDEAA IAVNEKGGTL AENKKGKTNK QKTGMETKVG  360
SSKEAALAAS PTKGKKKGSH KDKLDEEAKS GTAKVTSTIA TDDDDGTLGG SKREKAGKEE  420
LDGDTHIVMP KEATTTAASD DGTLVGSKKG KADNGKLDGD THSVMPKEAT AGTQNGGILT  480
GGENHKEKVD KDANVPSIRR EYAELQSLYP NLASFVNGIE AQHPCGSTFK RAFEFISDDK  540
ACTLESKIKK QKIAEVRMQL RLADTKKEVA NALLGLLD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.65980.0callus| leaf| panicle| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329880950.0
Expression AtlasQ6K8A9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g18660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g18660
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041680.0AP004168.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1756_H07.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626761.10.0neurofilament medium polypeptide
TrEMBLQ6K8A90.0Q6K8A9_ORYSJ; Os02g0288200 protein
STRINGOS02T0288200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72892737
Representative plantOGRP1298033