PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g18470.1
Common NameOs02g0286000, OSNPB_020286000
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 559aa    MW: 60250.5 Da    PI: 4.4871
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g18470.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.46.2e-15101521128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknra.....tk..sgyWka 85 
                       l pGf+F+P+ e+l++++L + +++++l ++ v+   d  ++ Pw L  ++ +++e+e yf  +      +g r++++     t    g W +
  LOC_Os02g18470.1  10 LSPGFKFNPSVEQLLCFFLLPYLQHRRLLVDGVVFLDDPASAPPWALLhRHGRGGEDEAYFIGPVPAGDGHGGRRQQQvsrtvTGggGGKWIK 102
                       579************************9998888888**********834555677799***9999888876554443233333266889*99 PP

               NAM  86 tgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + ++++  ++       +++  +   +L f+  ++ ++ +t Wvmhe+++
  LOC_Os02g18470.1 103 QRTERPRGEEepvvvfgGETFRWEEFSLNFHADERCRSGSTGWVMHEFAV 152
                       988888777655555544444888899****99999999*********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-283172IPR003441NAC domain
PROSITE profilePS5100523.52110172IPR003441NAC domain
PfamPF023657.1E-1012151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MATAAESQGL SPGFKFNPSV EQLLCFFLLP YLQHRRLLVD GVVFLDDPAS APPWALLHRH  60
GRGGEDEAYF IGPVPAGDGH GGRRQQQVSR TVTGGGGGKW IKQRTERPRG EEEPVVVFGG  120
ETFRWEEFSL NFHADERCRS GSTGWVMHEF AVVPPAGSRV AATHTACRIA FTGHGQKRKR  180
VPDGYVFVDV HVQTAAAAAA VAPPLPMLSS YGEPPHEHFS DDHPPPHSYT YYTQEYQQFL  240
PAAEQSDQEQ EYCAPEQQNF QDYHVAAAEQ TDQDYFYTEM INQEQDYAYQ QQQQHLFHGD  300
FLATSQQFLG QDHEVMFTGL GGGLVVSDNG EHASAAAPAT EPPVHDVFLE TLVPEPPENA  360
YVDGAGESAM ASASSAGGAP LLEQPFATPP QQFLDQEPAP AGLNDGGAMI YNNNGDGEHD  420
AAPAAQPPAR YYSGPVPAVD SVFLDKMREY LMADAKGLCR IDAPINNGEH AAAPAPAADD  480
PLAAQHGHGD APPLPVPPDA AELERVVGHL LREVEDIIKV AAAGGYGGSS DKPLSEFDKA  540
QNQILAKLMA VFNQVAES*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0VHQ0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g18470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g18470
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040010.0AP004001.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1115_D03.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0P0VHQ00.0A0A0P0VHQ0_ORYSJ; Os02g0286000 protein
STRINGORUFI02G12670.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143261123