PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g18460.1
Common NameOJ1115_D03.26, Os02g0285900, OSNPB_020285900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 504aa    MW: 56826.6 Da    PI: 3.8303
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g18460.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM47.36.5e-15101431127
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevd..iykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatg 87 
                       l pGf+F+P+d+ lv  +L + + + +l++     +++ +   + + Pw L  ++ +++e+e yf ++       g r+ r ++  g W ++ 
  LOC_Os02g18460.1  10 LSPGFKFNPSDQMLVELFLLPYLIDGELPVRGLvfVEDDHlgGLPLPPWILLdRHGRGDEDEAYFVAPMGA--GDGARQVRsVAGGGKWVKQR 100
                       579**********************9988866432444331146679****73444445558888887765..56889999788899**9776 PP

               NAM  88 k..dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                       +  + ev+++  +++  +   +L f++ ++++g +t Wvmhey 
  LOC_Os02g18460.1 101 SegKGEVVVApgGEAFLWENFSLNFHRDDRRSG-STGWVMHEYI 143
                       522334444444555588899*****8777776.9********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-253150IPR003441NAC domain
PROSITE profilePS5100521.91910164IPR003441NAC domain
PfamPF023652.7E-1112143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MAAAARSQGL SPGFKFNPSD QMLVELFLLP YLIDGELPVR GLVFVEDDHL GGLPLPPWIL  60
LDRHGRGDED EAYFVAPMGA GDGARQVRSV AGGGKWVKQR SEGKGEVVVA PGGEAFLWEN  120
FSLNFHRDDR RSGSTGWVMH EYIVSPPAGS AVAASHRATH IAFTGHGQNR KRVPDGYVLV  180
LDDAVPPAAA AAAPPPESEQ SNQEEQEYAA YTDQIQQQCF VPEQQMSNQE YFPEAAAEQS  240
NQQFFVPAEE QSSHQLFLPA EEQSNQQFFM PAEEQSSHQF LPAEEQSSHQ FLPAEEQSNY  300
QQFLPALEQM TQSNQEFAYG EQSQCYIVPE QQQLSNQEYA YSEQSQCYIL PEQQQLSDQE  360
YAYSEQSQCY ILPEQQELSN QEAEYAFVCY DEQQQQQQQS NQEAEYAFAC YDEQQQQQQQ  420
QYLHGDLTSW QEPFVTSSSS SSQQFLGQEQ LLPDGLLLDG FGEISQQQGD QEYAYCEESQ  480
CYIMPEQQQQ SNQEAEFAFA CYD*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6KA60
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g18460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g18460
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040010.0AP004001.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1115_D03.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ6KA600.0Q6KA60_ORYSJ; Os02g0285900 protein
STRINGOS02T0285900-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143261123
Representative plantOGRP1446524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-08NAC domain containing protein 47