PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g18370.1
Common NameOsJ_06276
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 1118aa    MW: 128801 Da    PI: 6.8991
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g18370.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.32.2e-17206288191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       +fY+++A ++GF  ++ +++++      +k t  C k g+++ + +  +++r+++  +rt+C+ak++vk++ +g+we + +++eHnH+l+p
  LOC_Os02g18370.1 206 RFYETHALKTGFVAKRGTNYRR------KKFTIECHKTGTSKLTPNP-QRKRKKNIIERTQCQAKVVVKLN-KGQWEYAAVRNEHNHPLCP 288
                       5*******************99......46789**********9999.9**********************.9****************97 PP
2FAR156.87.3e-18473558191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       +fY ++A  +GF  ++ +++k+      +k ++ C+k+gk + +k++    k+rr++ +++t+Cka++ vk++ +g+we t +++eHnH+l+p
  LOC_Os02g18370.1 473 RFYYAHALLTGFVGKRGTNYKR------KKFHLECNKSGKMKLTKSSenPMKKRRSNLVEKTQCKARVIVKLD-KGEWEFTAVRHEHNHPLCP 558
                       59******************99......4678********998887755789999******************.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.1E-15206288IPR004330FAR1 DNA binding domain
PfamPF031013.4E-16473558IPR004330FAR1 DNA binding domain
PfamPF105512.3E-25679771IPR018289MULE transposase domain
PROSITE profilePS509668.803961997IPR007527Zinc finger, SWIM-type
SMARTSM005750.0078972999IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1118 aa     Download sequence    Send to blast
MEDVLMHILP VDSEQRIAEN WNRLSAFGEI DLFKRSVLQV FARVNNLGNE ISPVQAWCQP  60
ELRGEKTSNN DGQTVITPVE LIKKPVEKQV ITEGRLQLAG DGYQLLSSNG IDKTAEQLYV  120
DQLGRQTNSM DQSLQHTDGQ NQSHDNMESN EVSSDDRNSD GDSDRSLGNE SDKGLGAHYS  180
PSLMELDNAR PPELGMKFAT LEDAQRFYET HALKTGFVAK RGTNYRRKKF TIECHKTGTS  240
KLTPNPQRKR KKNIIERTQC QAKVVVKLNK GQWEYAAVRN EHNHPLCPSY SLRFSKRKRR  300
RNPPSQKQLD VQRNSDQLTQ ADNLEERLSQ PLISADSNEV NNKRMPRHAE ISISTVEKEP  360
VDKLQRAGDY QEQSSNGIDK NTERPIVDKL GDQTSSIDHS LQHTEEHNRS HDNVESSEAP  420
SEDTSSESNS DSSSGDESDK ELGKYFYPSF DELKNSRPPE PGMKFPSLQA AQRFYYAHAL  480
LTGFVGKRGT NYKRKKFHLE CNKSGKMKLT KSSENPMKKR RSNLVEKTQC KARVIVKLDK  540
GEWEFTAVRH EHNHPLCPSP LLARFIVDHK QMSTGEKSFL RVLQQNRVPP KKIMKIFRKL  600
RVCFGDIPFE NKDEHNIAQT EHRKANSDVE SALKHFTELQ IQNPEFLYVM QKDEDNTVTS  660
IFWTDARLRI EYDIFGDLIM FDAAYSTDMY NMPFVPIIGI NSHATPFLLG CALLKDEKVE  720
TFEWMLRTFL QVMGGKMPRA VITNQDTSME KAFAELMPHV RLRFCKRHVM SKAQEKLGDF  780
MTARGNINTD LHNLVGNSLV ETEFEEGWVE LIERYNASEN QHLQLMWQTR KSWAPVYFRE  840
DLYPFIDSVG SNEGINSLFK GNMLPKDTID KFIGQFKEIQ ENIAKVHEED RFQSGADLKY  900
ISMQPIEQHA AHIYTREIFL KVQEELLHST AFNVQEIQIG TVYRLEKVFN YENPEFDRNY  960
FEVLAEPGIN AFKCQCAKFT RDGIPCCHIF RLFTQFGINE IPEQYIMPRW TKKFREEQLK  1020
QNKEKLFDKH GIKDSENTLR YAMLMSKAAE ICPKICHDEA KCSIFMQELD KIQEKLITES  1080
RENAQNDNPC REQGALQQEH RGSSSNTEQE QQHTGGL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247251RKRKK
2295300KRKRRR
3296300RKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.518490.0callus| flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329740960.0
Expression AtlasB9F516-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g18370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g18370
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0640780.0AK064078.1 Oryza sativa Japonica Group cDNA clone:002-100-A08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627510.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLB9F5160.0B9F516_ORYSJ; Uncharacterized protein
STRINGOS02T0284500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP1203336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-79FAR1-related sequence 5