PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g16680.2
Common NameLOC4328963, Os02g0266800, OsJ_06179, OSNPB_020266800, P0006C08.38
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 298aa    MW: 31674.1 Da    PI: 5.0307
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g16680.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.51.1e-16141192458
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                       +kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l    +  ++
  LOC_Os02g16680.2 141 VKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLT---DANQQ 192
                       79**************************************9995554...44443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-17138202IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.185140192IPR004827Basic-leucine zipper domain
PfamPF001702.7E-14141190IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.94E-13141193No hitNo description
Gene3DG3DSA:1.20.5.1701.6E-13142193No hitNo description
CDDcd147022.42E-23143193No hitNo description
PROSITE patternPS000360145160IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MKKCPSELNF EAFFHGERGE DDADAAADQK PGGGPHPPPF AMFSAADLSS FGFADSVTST  60
ITGVIPNHIW PQSQSLNARH PAVYTIESQS SICAASPTSA TTLNMKESQT LGGTSGSDSD  120
SESLLDIEGG PCEQSTNPLD VKRMRRMVSN RESARRSRKR KQAHLADLET QVDQLRGENA  180
SLFKQLTDAN QQFTTAVTDN RILKSDVEAL RVKVKMAEDM VARGALSCGL GHLGGLSPAL  240
NPRQGACRVP DVLTGLDYAG DDPFTGLSPP EQVQMPGGGE VGDAWGWDNH SNGAMSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154160RRSRKRK
2154161RRSRKRKQ
3156161SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.495140.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO5564080.0
Expression AtlasQ6ETX0-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
UniprotTISSUE SPECIFICITY: Expressed in developing endosperm, especially in aleurone layer cells. {ECO:0000269|PubMed:7919992}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g16680.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g16680
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0706740.0AK070674.1 Oryza sativa Japonica Group cDNA clone:J023063K11, full insert sequence.
GenBankRICRITA1A0.0L34551.1 Oryza sativa transcriptional activator protein (RITA-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625527.10.0bZIP transcription factor RISBZ3-like isoform X2
SwissprotQ6ETX00.0RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBLB8AFB80.0B8AFB8_ORYSI; Uncharacterized protein
STRINGOS02T0266800-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-39basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]