PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g16540.1 | ||||||||
Common Name | LOC4328953, Os02g0265200, OsJ_06167, OSNPB_020265200, P0006C08.18-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 362aa MW: 38242.5 Da PI: 4.7227 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.7 | 3.8e-31 | 175 | 233 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++ tY+geHnh+ LOC_Os02g16540.1 175 ADVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRSDPNTFILTYTGEHNHS 233 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.2E-32 | 160 | 235 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.832 | 169 | 235 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-26 | 172 | 235 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-37 | 174 | 234 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.5E-26 | 176 | 232 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007263 | Biological Process | nitric oxide mediated signal transduction | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MEEELCGNNW DLDAVVRLGC CRRRISPAAV AQQVDPFASF LQQGVAMEVA AEKEVGVEAA 60 WSFPELTVRD GGGGGLGRDA DELLKAFCAA FPSSSSSKSS PLPTPPPPPP TQPQPEQQKP 120 VTVQENLPAP TTAPARASQP AAARQVPAGG VPRSKRRKNQ QKKVVRHVPA DGVSADVWAW 180 RKYGQKPIKG SPYPRGYYRC SSSKGCPARK QVERSRSDPN TFILTYTGEH NHSAPTHRNS 240 LAGTTRNKLP SSSAASAASA QPQPPPPSVV VVGAGGGGAE AAGLSPTTPL RTPSMEEDEE 300 EEEEEELLVE DMEMAGEDEL LFLNGGDDNA ALDGTPMSSL FDIADEPFLP SPWTEPTAAG 360 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-19 | 158 | 236 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-19 | 158 | 236 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.50004 | 0.0 | callus| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32976793 | 0.0 | ||||
Expression Atlas | Q6ETY2 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00561 | DAP | Transfer from AT5G52830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g16540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g16540 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066775 | 0.0 | AK066775.1 Oryza sativa Japonica Group cDNA clone:J013074N21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623400.1 | 0.0 | probable WRKY transcription factor 27 | ||||
TrEMBL | Q6ETY2 | 0.0 | Q6ETY2_ORYSJ; Os02g0265200 protein | ||||
STRING | OS02T0265200-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5358 | 33 | 61 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 3e-44 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g16540.1 |
Entrez Gene | 4328953 |