PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g16240.1 | ||||||||
Common Name | Os02g0262500, OSNPB_020262500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 866aa MW: 101707 Da PI: 8.3939 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 76.7 | 4.5e-24 | 15 | 105 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fYn+YAke GFsvrk++ ++ + +t+r+++Cs+eg+r+e + ++++r+++a tr+gC+a +++k++k +g w v k + +HnH+la LOC_Os02g16240.1 15 FYNRYAKEKGFSVRKNYIRRDPITAAVTHRQYQCSREGHRKEVYMEaANRSREPKALTRCGCNALFEIKLDKkKGDWFVVKYVAKHNHPLA 105 9****************************************998876789999******************99****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-22 | 15 | 105 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.6E-34 | 227 | 321 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.878 | 492 | 543 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0066 | 518 | 545 | IPR006564 | Zinc finger, PMZ-type |
PROSITE profile | PS50600 | 12.878 | 627 | 813 | IPR003653 | Ulp1 protease family, C-terminal catalytic domain |
Pfam | PF02902 | 1.5E-14 | 646 | 812 | IPR003653 | Ulp1 protease family, C-terminal catalytic domain |
SuperFamily | SSF54001 | 3.92E-27 | 646 | 827 | No hit | No description |
Gene3D | G3DSA:3.30.310.130 | 8.4E-13 | 698 | 808 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006508 | Biological Process | proteolysis | ||||
GO:0008234 | Molecular Function | cysteine-type peptidase activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 866 aa Download sequence Send to blast |
MTAMRFKTEK EGFLFYNRYA KEKGFSVRKN YIRRDPITAA VTHRQYQCSR EGHRKEVYME 60 AANRSREPKA LTRCGCNALF EIKLDKKKGD WFVVKYVAKH NHPLAKSDEV AFLRSHRTIS 120 NAQKANILEL KEVGLRQHQV MDVMERHHSG FDATGFVSRD LYNYFTRLRK KHILGGDAER 180 VIKYFQWRQK HDMEFFFEYE TDEAGRLKRL FWSDPQSRID YDAFGDVVVF DSTYRVNRYN 240 LPFILFVGVN HHGSTVIFGC AIVADEKVAT YEWILKQFLD CMYQKHPRGL ITDGDNAMHR 300 AIAAVMPDSE HRLCTWHIEQ NMARHLRPDM LSDFRALVHA PYDHEEFERK WVEFKVKHKG 360 CEDNQWLARM YNLRKKWATA YTKGLFFLGM KSNQRSESLN SKLHRYLDRK MSLVLLVEYY 420 EHCLSRMRYR EADLDCKASQ SIPFTSNDAS LTEKDAARIF APAVFKKLKL VIAKSMDWEV 480 IDCVEEDNLV KYVISMKGDS EMLQILNCTY MESTMKSINC TCRKMDRECL PCEHMVAIMH 540 HLKLDAIPEA CIVRRWTIKA KHMFPSDRYG EVYTWSDQME RYRRLRSMGT EVFFKCSVSK 600 ETTLMVMEML EKLDLETDEC ETNNSDLTLC GHVLAQSSRT DIESHDKVID AYIMLIKDMQ 660 CESPRENGTA FLESTAHCQA WKTNGEQIGT RNKQYQDKRA KVTAKYLQHD MIFLPLNRNS 720 THWYVAVLNG AKEKIQILDS MRMDKSYYDK DKDLNNTIKG IEKFIQYARL EDEVENKWKN 780 TKITNWPFCP MKVPQQSDSW SCGLHTLKFI QHWNGKELSP EFNEMDTTTT FKHKVAANLI 840 NSTMNEVIEV QQDIKRLVTE ANEGN* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | A0A0P0VHJ2 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g16240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g16240 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005631 | 0.0 | AP005631.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0049K19. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649607.2 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A0P0VHJ2 | 0.0 | A0A0P0VHJ2_ORYSJ; Os02g0262500 protein | ||||
STRING | OS03T0164400-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-96 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g16240.1 |