PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os02g16140.1

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 364aa MW: 40755.8 Da PI: 5.4759

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os02g16140.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.4	9.8e-23	168	256	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YAk+vGFs+++++s+ks ++ge k fvC+k g +e++ ++ k+ +++ + + Cka+++vk++ ++wev+++++eH+H+l+ LOC_Os02g16140.1 168 HYNRYAKRVGFSIKINTSRKSAKDGERDKVMFVCNKCGPEEKTGEAcPPKKMKRSRTRQAACKARMTVKRK-GARWEVIQFVEEHTHPLV 256 6***************************************9999444444555566689*****9.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-20	168	256	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MDFDLNSIPE LVSGENEPPV HHLLVDDEDR NETYFPINLT DTSMEIPAIN LDDTFDFETM 60 YTTGDAGSLQ AHNVANDEMQ VFEANDEMQI FEGDDEMQVF EEMSDRADTM HTSVATGATT 120 ATANTISSED TGTDDSEAQS APSQDIPCST QVPYLTLTFN SEEEARAHYN RYAKRVGFSI 180 KINTSRKSAK DGERDKVMFV CNKCGPEEKT GEACPPKKMK RSRTRQAACK ARMTVKRKGA 240 RWEVIQFVEE HTHPLVRKFS LKKFLRSHRA IPKEEKDFIT MLHGVNLSAG TIIVTTGNNP 300 TGVPYVRVLF LVQGGKTEPQ TKPYPLDMWK YGSALQQRPE DRSLCGRGAT IKTMHPKPSL 360 KPF*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MDFDLNSIPE LVSGENEPPV HHLLVDDEDR NETYFPINLT DTSMEIPAIN LDDTFDFETM  60
YTTGDAGSLQ AHNVANDEMQ VFEANDEMQI FEGDDEMQVF EEMSDRADTM HTSVATGATT  120
ATANTISSED TGTDDSEAQS APSQDIPCST QVPYLTLTFN SEEEARAHYN RYAKRVGFSI  180
KINTSRKSAK DGERDKVMFV CNKCGPEEKT GEACPPKKMK RSRTRQAACK ARMTVKRKGA  240
RWEVIQFVEE HTHPLVRKFS LKKFLRSHRA IPKEEKDFIT MLHGVNLSAG TIIVTTGNNP  300
TGVPYVRVLF LVQGGKTEPQ TKPYPLDMWK YGSALQQRPE DRSLCGRGAT IKTMHPKPSL  360
KPF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os02g16140.1

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os02g16140

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005631	0.0	AP005631.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0049K19.
GenBank	AP005777	0.0	AP005777.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0026F09.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0E0LY81	1e-166	A0A0E0LY81_ORYPU; Uncharacterized protein
STRING	OPUNC09G00260.1	1e-166	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5595	4	6
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-16	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	LOC_Os02g16140.1