PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g15340.1
Common NameOsJ_06105
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 360aa    MW: 39268.6 Da    PI: 6.8724
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g15340.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.87.6e-52101411128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                       +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+   ++ +  ++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk
  LOC_Os02g15340.1  10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgAQEEWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDK 101
                       69****************************.9***************843444443566********************************** PP

               NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++    +g+ +gl+ktLvfy+grap+g+ktdW+mheyrl
  LOC_Os02g15340.1 102 AIFLGsgGGTRIGLRKTLVFYTGRAPHGKKTDWIMHEYRL 141
                       ***98778888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.2E-578161IPR003441NAC domain
PROSITE profilePS5100558.16210161IPR003441NAC domain
PfamPF023654.3E-2711141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MHPNGAPLAV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR  60
IGTGAQEEWY FFSHKDKKYP TGTRTNRATV AGFWKATGRD KAIFLGSGGG TRIGLRKTLV  120
FYTGRAPHGK KTDWIMHEYR LDDDNVDVPE EGWVVCRVFK KKSIHQRGFD QPDMAAAADE  180
DELRYQLLHG AGMSSSPVDQ KHVLLQEQLV AHGAHGGGFV VPAFEASMHL PQLASADAAP  240
CGGGGGGHVA FASMNPLDAA GCGSQNMMTM KMAATSGGEM LLMSGGGVDG GRFGAAADWS  300
ILDKLLASHQ NLDQLFHGKV AGAHQQQQQM AMDAASSLQR LPFHHYLGLE AADLLKFSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-50816715171NO APICAL MERISTEM PROTEIN
1ut4_B1e-50816715171NO APICAL MERISTEM PROTEIN
1ut7_A1e-50816715171NO APICAL MERISTEM PROTEIN
1ut7_B1e-50816715171NO APICAL MERISTEM PROTEIN
3swm_A1e-50816718174NAC domain-containing protein 19
3swm_B1e-50816718174NAC domain-containing protein 19
3swm_C1e-50816718174NAC domain-containing protein 19
3swm_D1e-50816718174NAC domain-containing protein 19
3swp_A1e-50816718174NAC domain-containing protein 19
3swp_B1e-50816718174NAC domain-containing protein 19
3swp_C1e-50816718174NAC domain-containing protein 19
3swp_D1e-50816718174NAC domain-containing protein 19
4dul_A1e-50816715171NAC domain-containing protein 19
4dul_B1e-50816715171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.518310.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329739610.0
Expression AtlasB9F4T8-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, developing flowers, embryo and callus. Weakly expressed in roots. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g15340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g15340
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0639430.0AK063943.1 Oryza sativa Japonica Group cDNA clone:001-123-E07, full insert sequence.
GenBankAK1012800.0AK101280.1 Oryza sativa Japonica Group cDNA clone:J033033C18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624882.10.0NAC domain-containing protein 76-like
RefseqXP_025878787.10.0NAC domain-containing protein 76-like
SwissprotQ5Z6B61e-107NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLB9F4T80.0B9F4T8_ORYSJ; Uncharacterized protein
TrEMBLQ6K5390.0Q6K539_ORYSJ; Os02g0252200 protein
STRINGOS02T0252200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.33e-94NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]