PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g13900.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family BES1
Protein Properties Length: 377aa    MW: 38854.3 Da    PI: 9.567
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g13900.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822171.44.7e-5351661145
            DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr..........kgskpl.eeaeaa 82 
                       gg+gr ptw+ErEnn+rRERrRRaiaakiyaGLRa+Gny lpk++DnneVlkALc+eAGw+ve+DGttyr          ++ k+   +++++
  LOC_Os02g13900.1   5 GGGGRVPTWRERENNRRRERRRRAIAAKIYAGLRAYGNYTLPKHCDNNEVLKALCNEAGWTVEPDGTTYRkywsldrieaAHVKKGlVKEAIM 97 
                       689*******************************************************************55444444332333332223333 PP

            DUF822  83 gssasaspesslqsslkssalaspvesysaspk.sssfpspssldsislasa.....asllpvlsvlsl 145
                        +   + p s+l  +l  s  asp++sy++sp+ +ssfps+ s+++i+l        +sl+p+l++ls+
  LOC_Os02g13900.1  98 ETKGCKPPASELADQLGRSPSASPCSSYQPSPRgTSSFPSSGSSSQITLGGGgggegSSLIPWLKTLSS 166
                       3333345556666788889999********99746899***9999999987789999999999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.2E-606165IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:0040008Biological Processregulation of growth
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MMNGGGGGRV PTWRERENNR RRERRRRAIA AKIYAGLRAY GNYTLPKHCD NNEVLKALCN  60
EAGWTVEPDG TTYRKYWSLD RIEAAHVKKG LVKEAIMETK GCKPPASELA DQLGRSPSAS  120
PCSSYQPSPR GTSSFPSSGS SSQITLGGGG GGEGSSLIPW LKTLSSAGVG IGGGSSSKFP  180
AHYSYFGGGS ISAPVTPPSG SPPRTPRLKT AAWEEYHHHH AGSVLPPWAT VGASYAYAAS  240
SSLPNSTPPS PRRKVAAAAA AAGGGNDAAA WLAGFQISSA GPSSPTYSLV APPPNPFGAA  300
AAAAGSSSRV MSGACSPVAG GDVQMADAAR REFAFGGEGG KMTGLVKAWE GERIHEECGS  360
DDLELTLGSS MTRGDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A5e-20975372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B5e-20975372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C5e-20975372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D5e-20975372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g13900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g13900
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040700.0AP004070.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1705_E12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624154.11e-180protein BZR1 homolog 4
SwissprotQ6EUF10.0BZR4_ORYSJ; Protein BZR1 homolog 4
TrEMBLA0A0E0G4060.0A0A0E0G406_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NC580.0A0A0E0NC58_ORYRU; Uncharacterized protein
STRINGORUFI02G09890.10.0(Oryza rufipogon)
STRINGONIVA02G10940.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Representative plantOGRP15951542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.16e-43BES1/BZR1 homolog 4