PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g13670.1 | ||||||||
Common Name | OSJNBb0035N08.33 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 211aa MW: 21955.6 Da PI: 10.5342 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.3 | 4.2e-06 | 20 | 93 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...........................TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkas........................kapskKlsKaeiLekAveYIksLq 55 + Er RR+++N+ ++ L +l+ +a+ ++ + + + L A eYI++ q LOC_Os02g13670.1 20 KTTERIRREQMNKLYSHLDSLVRSAPptvnsipshsnsnskyhqrklrilGGAAAATTRPDRLGVAAEYIRQTQ 93 568*********************66699999999999999999999997667777888888888888888866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-5 | 20 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-6 | 20 | 42 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-6 | 70 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0090575 | Cellular Component | RNA polymerase II transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MEIPPPSAGG GGGGGKPDRK TTERIRREQM NKLYSHLDSL VRSAPPTVNS IPSHSNSNSK 60 YHQRKLRILG GAAAATTRPD RLGVAAEYIR QTQERVDMLR EKKRELTGGG GGGSSSSSGA 120 GAATAAAPEV EVQHLGSGLH AILFTGAPPT DGASFHRAVR AVEDAGGQVQ NAHFSVAGAK 180 AVYTIHAMIG DGYGGIERVV QRLKEAIRSN * |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6H522 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g13670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g13670 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005756 | 0.0 | AP005756.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0035N08. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015688523.1 | 5e-72 | PREDICTED: uncharacterized protein LOC107303503 | ||||
TrEMBL | Q6H522 | 1e-149 | Q6H522_ORYSJ; Uncharacterized protein OSJNBb0035N08.33 | ||||
STRING | ORGLA02G0086900.1 | 1e-110 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11987 | 29 | 38 | Representative plant | OGRP14459 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 2e-14 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g13670.1 |