PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g13310.1
Common NameLOC4328784, Os02g0226600, OsJ_05952, OSNPB_020226600, P0495C02.27
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TALE
Protein Properties Length: 540aa    MW: 55534.9 Da    PI: 6.5561
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g13310.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.3e-094635011854
                       HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       +Fe+   +yp+ +e+e LA++ gL+ +qV++WF N R +
  LOC_Os02g13310.1 463 MFENflRPYPKDSEKEMLAARSGLSRNQVSNWFINARVR 501
                       57766689*****************************88 PP
2BELL31.44.8e-11321394672
              BELL   6 qkkkakLlslleeVdkrYkqyveqlqtvissFea.......vaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       q+ ++ Ll++l+ +d++Y+q+ +++q   + F++       +ag+ s+ + + +A +a+S  +  L+ +ia+ i
  LOC_Os02g13310.1 321 QRLRSELLTMLQLMDQKYNQCLDEIQSTTARFNTlthatarAAGMSSSSICAPFAHRAVSAMYHGLRRRIAGEI 394
                       666799**************************96444444478***************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005740.0012236392IPR006563POX domain
PfamPF075262.3E-24241391IPR006563POX domain
PROSITE profilePS5007111.58442505IPR001356Homeobox domain
CDDcd000867.46E-12445506No hitNo description
Gene3DG3DSA:1.10.10.607.6E-25445516IPR009057Homeodomain-like
SMARTSM003891.9E-7445509IPR001356Homeobox domain
SuperFamilySSF466891.54E-15446514IPR009057Homeodomain-like
PfamPF059201.2E-15462501IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MSGNPSFSQL GAVDAAMNGG YFMAASGNGA DVPLFHPAMA PPHDHGGSFG YGDAAAAAMD  60
VGAHFAAANN LVLASLATQL FGAAPAAAAH GHGDYLGATT PPEEEMGGGY DVAVGDSSGG  120
AVSLACLGHG QPGDMAAGWC STSARKPSCN WSSSNAGVHG GSYYLAGVPE AAGFVSAAAA  180
ASELSLSLCS KSSSDSMLNA GGDQCSSAAS RSGLTQMSRV VVVEPEPPLV PYYPAANFAV  240
VVARSRYAAV AQQVLNDAVG CVLGGVADAA ADSASGVDSG SSRPSSCSVA GGAPSSAVSS  300
NNQLIASSGE HTHGGGDASA QRLRSELLTM LQLMDQKYNQ CLDEIQSTTA RFNTLTHATA  360
RAAGMSSSSI CAPFAHRAVS AMYHGLRRRI AGEIMSAAAA AGRPCRGGES SSAVTGGERE  420
RSWESAFIQK HWAVQQLRRG EQQCWRPQRG LPEKSVAVLK AWMFENFLRP YPKDSEKEML  480
AARSGLSRNQ VSNWFINARV RLWKPMIEEM CEELKRSSGG GAGNQALAME HMNSQDVVS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.563220.0panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6H6J2
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g13310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g13310
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8332670.0CT833267.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA225A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624855.10.0homeobox protein ATH1 isoform X2
RefseqXP_025878539.10.0homeobox protein ATH1 isoform X2
TrEMBLQ6H6J20.0Q6H6J2_ORYSJ; Os02g0226600 protein
STRINGOS02T0226600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.15e-54homeobox gene 1