PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g12820.1
Common NameB1131G07.17
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 644aa    MW: 66924.6 Da    PI: 9.7567
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g12820.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11427470553
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                       h + ErrRR+r+N++fe Lr llP+       K +Ka++L k+ eY++ 
  LOC_Os02g12820.1 427 HMISERRRRERLNESFEHLRGLLPPG-----SKKDKATVLAKTLEYMNL 470
                       8899********************95.....599************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-16421492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.212422471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-15426491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9427470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-11428477IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.55E-5437471No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MDTIFVLGQE SRQRILHRAA ARLPGCAYVC AWAPLPLVAA AGLHHQRPSS GGAAGAARLL  60
YCVDGWLSGG EDGGGCVRAL FDAYRGSVCG AVTGCVPGWA YVGGGGGVFM ELSELELVAS  120
ASLPVQQSFY QEAGIKMAAF MGCESGEIEV GFSTAPAENY GGGGGGGSLQ ASVEQVFSED  180
FFQQSLLEEL LQLPPTRPSS SSSSLVGSPA DGAASTSLLR TMTPMMASSS ATPSPRELAA  240
QVATTTTTTT TPSSSSRLHP RPPAPHHVHV SPFSRHGGVG GSGVLHFPSA EADDAAMAQA  300
MLDVISSPST SSSAAALHAP WSSVKHRAQI IRSPRRGTPT TTAFRAYNAA LAPRAAASRR  360
PPGAPGQRMI KMGFSILRRM HMVRCSQERA AAAAAAASAA AAQRSGGGDD EDATAAPPPP  420
TSSQLHHMIS ERRRRERLNE SFEHLRGLLP PGSKKDKATV LAKTLEYMNL LIAQISELEA  480
KNRALQTQIH QRANGSSSSR SSMIRTVNEV HHHHNHQWLA VAAAAGGSPE RVQVHVIGGG  540
DHDGGASASS SSSAPEVTVR VAVRAPERGG ADVSELVLRV LALLKAMGGF TVVAVDARQP  600
GGGGGNGVAQ ASLTLRATVR MLTLLKRMFR AKNHSSSDQI IRL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1430435ERRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.988880.0flower
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6YW41
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g12820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g12820
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057970.0AP005797.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1131G07.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623939.10.0putative transcription factor bHLH041
TrEMBLQ6YW410.0Q6YW41_ORYSJ; Basic helix-loop-helix (BHLH) family protein-like
STRINGORUFI02G09060.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Representative plantOGRP1445644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-12bHLH family protein