PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g12790.1
Common NameB1131G07.8, LOC4328751, Os02g0220400, OSNPB_020220400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 354aa    MW: 37637.9 Da    PI: 9.7819
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g12790.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.4e-17178211134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  LOC_Os02g12790.1 178 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 211
                       *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-13169212No hitNo description
SMARTSM004011.1E-16172223IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.268176208IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.3E-14176211IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.41E-12177205No hitNo description
PROSITE patternPS003440178203IPR000679Zinc finger, GATA-type
PfamPF003202.6E-15178211IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MSTIYMSQLP ATLPLMEGDQ DQGLYPAFHR AKDPPILFPF MIDSAVEHQG QIYGDQGLRR  60
QQVLGESNQQ FNDHMMMGGS DVFLTPSPFR PTIQSIGSDM IQRSSYDPYD IESNNKQHAN  120
GSTSKWMSTP PMKMRIIRKG AATDPEGGAV RKPRRRAQAH QDESQQQLQQ ALGVVRVCSD  180
CNTTKTPLWR SGPCGPKSLC NACGIRQRKA RRAMAAAANG GAAVAPAKSV AAAPVNNKPA  240
AKKEKRAADV DRSLPFKKRC KMVDHVAAAV AATKPTAAGE VVAAAPKDQD HVIVVGGENA  300
AATSMPAQNP ISKAAATAAA AAASPAFFHG LPRDEITDAA MLLMTLSCGL VHS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.537330.0leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329848160.0
Expression AtlasQ6YW48-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in leaves and stems, and, at low levels, in roots. {ECO:0000269|PubMed:23548780}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g12790.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g12790
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0996070.0AK099607.1 Oryza sativa Japonica Group cDNA clone:J013048G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625859.10.0protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1-like
SwissprotQ6YW480.0CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A0E0NBT60.0A0A0E0NBT6_ORYRU; Uncharacterized protein
STRINGORUFI02G09020.10.0(Oryza rufipogon)
STRINGOS02T0220400-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-16GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]