PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g12310.1
Common NameLOC4328715, OJ1006_D05.18, Os02g0214500, OsJ_05880, OSNPB_020214500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 253aa    MW: 28162.6 Da    PI: 5.2857
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g12310.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM118.37.6e-37121431128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       +ppGfrF+Ptde+lvv+yL+++++++++ +   i+++d+y+v+Pw+Lp +++++++++ yfF+ +++++    +++r+t sg+Wk tg++k++
  LOC_Os02g12310.1  12 MPPGFRFQPTDEQLVVDYLQRRTAAQPCVT-PDITDIDVYNVDPWQLPaMAMYGSDHDRYFFTMAAREA----QARRTTPSGFWKPTGTKKTI 99 
                       79*************************988.55***************778888999*******99875....7899**************** PP

               NAM  93 lsk...kgelvglkktLvfy......kgrapkgektdWvmheyrl 128
                       ++    ++  + +k+ +vfy      +g++ + +kt+W+mheyrl
  LOC_Os02g12310.1 100 FVVaggHEVPTAVKRRFVFYlghhqpSGSN-NNNKTSWIMHEYRL 143
                       99976666669*********6554433333.346*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-424177IPR003441NAC domain
PROSITE profilePS5100541.52612177IPR003441NAC domain
PfamPF023652.2E-2213143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAMTPQLAFS RMPPGFRFQP TDEQLVVDYL QRRTAAQPCV TPDITDIDVY NVDPWQLPAM  60
AMYGSDHDRY FFTMAAREAQ ARRTTPSGFW KPTGTKKTIF VVAGGHEVPT AVKRRFVFYL  120
GHHQPSGSNN NNKTSWIMHE YRLMNSPRAA VPSSSSVNRL PTDDLTEEMV LCRISNKDLP  180
KPPFIHNSLL QFSSVGLNGD GYNYLILDHL EPPAMEYPNV GIGNVDDAAA GTDDPGDLDE  240
EIDDSMQRNH GG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-281217717165NO APICAL MERISTEM PROTEIN
1ut4_B2e-281217717165NO APICAL MERISTEM PROTEIN
1ut7_A2e-281217717165NO APICAL MERISTEM PROTEIN
1ut7_B2e-281217717165NO APICAL MERISTEM PROTEIN
3swm_A2e-281217720168NAC domain-containing protein 19
3swm_B2e-281217720168NAC domain-containing protein 19
3swm_C2e-281217720168NAC domain-containing protein 19
3swm_D2e-281217720168NAC domain-containing protein 19
3swp_A2e-281217720168NAC domain-containing protein 19
3swp_B2e-281217720168NAC domain-containing protein 19
3swp_C2e-281217720168NAC domain-containing protein 19
3swp_D2e-281217720168NAC domain-containing protein 19
4dul_A2e-281217717165NAC domain-containing protein 19
4dul_B2e-281217717165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.109445e-85flower| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6H8A9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g12310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g12310
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1072830.0AK107283.1 Oryza sativa Japonica Group cDNA clone:002-126-B03, full insert sequence.
GenBankEF1224790.0EF122479.1 Oryza sativa (japonica cultivar-group) clone KCS348H05 NAC6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625739.10.0NAC domain-containing protein 48-like
TrEMBLA0A0E0NBM60.0A0A0E0NBM6_ORYRU; Uncharacterized protein
TrEMBLQ6H8A90.0Q6H8A9_ORYSJ; NAC6
STRINGORUFI02G08550.10.0(Oryza rufipogon)
STRINGOS02T0214500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165401213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.13e-34NAC family protein