PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g10860.1 | ||||||||
Common Name | Os02g0203000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 361aa MW: 38270 Da PI: 10.6131 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 45.4 | 1.7e-14 | 171 | 232 | 1 | 62 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +ke kr +r+ +NR++A+ R+RKka++ Le kvk Le++N++L ++ ++l++e + l++ LOC_Os02g10860.1 171 DKEHKRLKRLLRNRVSAQQARERKKAYLNDLEVKVKDLEKKNSELEERFSTLQNENQMLRQI 232 5899*****************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.5E-15 | 171 | 235 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.0E-13 | 172 | 233 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.461 | 173 | 236 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.8E-16 | 175 | 235 | No hit | No description |
SuperFamily | SSF57959 | 6.88E-13 | 175 | 233 | No hit | No description |
CDD | cd14704 | 7.61E-21 | 176 | 227 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 178 | 193 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF49899 | 2.15E-14 | 270 | 349 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Pfam | PF00139 | 1.0E-14 | 271 | 343 | IPR001220 | Legume lectin domain |
Gene3D | G3DSA:2.60.120.200 | 5.7E-14 | 271 | 345 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003690 | Molecular Function | double-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0030246 | Molecular Function | carbohydrate binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MATTRASLTD PLLPSPAARA PVKAKKLSWS MLHASSKDER RGQSGEAEAE ASGGVHANPS 60 SPARMQEQAT SSRPSSSERS SSSGGHHMEI KEGKEAPLRS LLLPFLDFHF TVPLSGMESD 120 EEIGRVPELG LEPGGASTSG RAAGGGGGGA ERAQSSTAQA SARRRGRSPA DKEHKRLKRL 180 LRNRVSAQQA RERKKAYLND LEVKVKDLEK KNSELEERFS TLQNENQMLR QILKNTTVSR 240 RGPVLLKIPK SGLREAAPAG CGGLREAEGD EKFVLNGFTA ANLSFDGMAT VTPNGLLMLT 300 NGTNQLKGHA FFPALLQFHR TPNSMAMQSF STAFVIGIIS AFEDQGSGSP AAAGGSGRAA 360 * |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q0E2Y8 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00117 | ampDAP | Transfer from AT5G11260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g10860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g10860 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004045 | 0.0 | AP004045.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1135_F06. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623711.1 | 1e-101 | transcription factor HY5 | ||||
TrEMBL | Q0E2Y8 | 0.0 | Q0E2Y8_ORYSJ; Os02g0203000 protein | ||||
STRING | ONIVA02G09400.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1408 | 38 | 111 | Representative plant | OGRP2081 | 17 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11260.1 | 1e-37 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g10860.1 |