PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g10840.1 | ||||||||
Common Name | LOC4328660, Os02g0202800, OsJ_05805, OSNPB_020202800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 722aa MW: 81612.9 Da PI: 7.5914 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.3 | 9.5e-22 | 88 | 174 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++vGFs+rk++ +++ +g+ ++ f Cs+eg++ ++++ r++r++tr +Cka+l+ +++g w v+k+el+H H l+ LOC_Os02g10840.1 88 DFYNSYARNVGFSIRKNHANTR-ADGSLCSKYFLCSNEGQPVASTTQ--PGRKKRSSTRSDCKARLQFYISREGIWTVQKVELDHKHYLV 174 6***************997775.9999**************998877..9*************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-18 | 88 | 174 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.6E-31 | 289 | 383 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.348 | 570 | 605 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.4E-5 | 579 | 603 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.2E-5 | 580 | 607 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001015 | developmental stage | K second mitotic division stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 722 aa Download sequence Send to blast |
MSGPVVPLAW TAQGPCEPSP GSGPLPVSAA ASDPPAPSSS VPAGGREPSA SGLPPAVTPQ 60 LGDHDQGGLP NCVPKVGMTF NSENEAYDFY NSYARNVGFS IRKNHANTRA DGSLCSKYFL 120 CSNEGQPVAS TTQPGRKKRS STRSDCKARL QFYISREGIW TVQKVELDHK HYLVSPDKSH 180 MLRSQRRLTP SYQQIVNEMR QEGITAADMQ RVFRQWSRGA ENVHLLKKDT QRKYLQPSYA 240 QKLLEYLKNK QTENPSFFYA VQLNDDGRIA NFFWTDCQAI VDYACFGDVV SFDTTFETNK 300 FEMPFAPFVG TNHHKQPILF GASLIYDESS ESFNWLFQTF LTAMSGKQPA TIFTDPSAEI 360 IKSVRLVFPN SSHRLCLRHI CHNAVKHLNH VICNHPEFLS DFKRRIYEER SVTFFDLKWK 420 ELVNAYNLDG NDWMNNLYAM REKWAAVYSR DSFYADMMTI QNAEGTSDAL KNFRRKLCLP 480 EFLEEYEKCI TSFRQNELEA DYNSRQTSPV PYVPDLPMLK TAAESYTRNL YSHFEEEFKK 540 LFTLSCSLLS QDRTISTYKL TPLNSEEEAY VVFNSEDTTV SCSCRMYECT GMLCKHALRV 600 LNYSNIFTFP SHYVYKRWTK YAKAGLFGCR NNSQSGNGSS MLRCARISQK MHSVALRYSM 660 SEKALQFLES GVDKLTCEVE NLLSHINLNG NGNDTGQSSG FCNGAMAESL GHSESMYSEG 720 A* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.6191 | 0.0 | callus| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32987291 | 0.0 | ||||
Expression Atlas | Q0E2Z0 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g10840.1 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g10840 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102813 | 0.0 | AK102813.1 Oryza sativa Japonica Group cDNA clone:J033108L18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626734.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
TrEMBL | Q0E2Z0 | 0.0 | Q0E2Z0_ORYSJ; Os02g0202800 protein | ||||
STRING | OS02T0202800-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-123 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g10840.1 |
Entrez Gene | 4328660 |