PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os02g10420.1 | ||||||||
Common Name | LOC107276623, OJ1524_D08.32, OsJ_05761, P0026H03.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 111aa MW: 12221.8 Da PI: 9.3249 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.8 | 3.5e-17 | 9 | 78 | 18 | 86 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +p +f e+hg+ +e +++ +grsW+v+l++ r +++r vl+ GW +F+ +ngL +gD++ F+ + LOC_Os02g10420.1 9 VPVEFQEAHGYAARE--KVV-LRMRGRSWTVRLKHtkgrRPRRERAVLRYGWHRFCADNGLAVGDTCFFRALR 78 7999*****998665..455.45599*******998887777788************************9654 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.929 | 1 | 104 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0033 | 1 | 104 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-24 | 8 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.20E-12 | 9 | 75 | No hit | No description |
SuperFamily | SSF101936 | 2.16E-15 | 9 | 78 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.6E-14 | 9 | 78 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 111 aa Download sequence Send to blast |
MSAMLNENVP VEFQEAHGYA AREKVVLRMR GRSWTVRLKH TKGRRPRRER AVLRYGWHRF 60 CADNGLAVGD TCFFRALRSA GSGAGDVDDG DGDHVLSVTV HKADGGDPLE * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 44 | 49 | RPRRER |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.7036 | 9e-57 | flower| panicle| seed |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32980884 | 9e-57 | ||||
Expression Atlas | A3A463 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os02g10420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os02g10420 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP004191 | 1e-175 | AP004191.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1524_D08. | |||
GenBank | AP004812 | 1e-175 | AP004812.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0026H03. | |||
GenBank | AP014958 | 1e-175 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 1e-175 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878688.1 | 3e-60 | B3 domain-containing protein LOC_Os02g10420, partial | ||||
Swissprot | A3A463 | 3e-77 | Y2042_ORYSJ; B3 domain-containing protein LOC_Os02g10420 | ||||
TrEMBL | A0A0E0NB80 | 7e-75 | A0A0E0NB80_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G07540.1 | 1e-75 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4748 | 32 | 64 | Representative plant | OGRP14142 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31630.1 | 4e-08 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os02g10420.1 |
Entrez Gene | 107276623 |