PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g10360.1
Common NameOJ1524_D08.25
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 424aa    MW: 44138.7 Da    PI: 5.7611
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g10360.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS280.16.4e-86414203374
              GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                        l+l+cA+ v+ gdl  a+++ + +   a p+g++  Rla++f++AL a   +      k  +        ++ + aa+ ++ ++ P+l+f+h
  LOC_Os02g10360.1  41 GLVLACADLVHRGDLDGARRVAEAVLAAADPRGEAGDRLAHHFARALLALRGG-----GKGGHGGGG--GGVVPSSAAYLAYIKIAPFLRFAH 126
                       5789******************************************9886666.....222222222..236667789999************ PP

              GRAS  96 ltaNqaIleavege......ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                       ltaNqaIlea++ +      + +Hi+D+d+ +G+QWp+Llqa+a+R+    ++pp++R+Tg g     +++ l +tg+rL+ f ++l++pf+f
  LOC_Os02g10360.1 127 LTANQAILEAAAADaggahrRVLHIVDLDAAHGVQWPPLLQAIADRAdpavGPPPEVRLTGAGT----DRDVLLRTGDRLRAFSSSLNLPFRF 215
                       **********9988788884555************************88888899*********....************************* PP

              GRAS 179 nvl...vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse........sFlerflea 260
                       ++l    + +l++  + +L+++p+E+laVn+vl lh+l   +++l+     +L+ vks++P vv+++e+e  +++         ++ +r++ a
  LOC_Os02g10360.1 216 HPLilpCTAELAADPTAALELHPDETLAVNCVLFLHKLG-GDGELAA----FLRWVKSMNPAVVTIAEREGVLGGDvdddnvpdELPRRVAAA 303
                       ***554445666668899********************8.5666666....*******************888655577788999******** PP

              GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352
                       ++yys++fd+lea++p++s +r  vE+e+l+rei  +va+ ga    r + +  W ++ ++aG+ p pls +aa+qa+lllr ++ s+gy+ +
  LOC_Os02g10360.1 304 MDYYSSVFDALEATVPPASADRLAVEQEILSREIDAAVAAPGAGGGGRARDFDAWASAARAAGLAPRPLSAFAASQARLLLRLHYpSEGYKAD 396
                       ********************************************************************************************* PP

              GRAS 353 ee..sgslvlgWkdrpLvsvSaWr 374
                       ++  +g+ +l W++rpL+svS+W+
  LOC_Os02g10360.1 397 DDggRGACFLRWQQRPLMSVSSWQ 420
                       996667788**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.60813397IPR005202Transcription factor GRAS
PfamPF035142.2E-8341420IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MLGSSPARDR GGGDDAEASE QPQPQPQPPL SPRAGGGEAR GLVLACADLV HRGDLDGARR  60
VAEAVLAAAD PRGEAGDRLA HHFARALLAL RGGGKGGHGG GGGGVVPSSA AYLAYIKIAP  120
FLRFAHLTAN QAILEAAAAD AGGAHRRVLH IVDLDAAHGV QWPPLLQAIA DRADPAVGPP  180
PEVRLTGAGT DRDVLLRTGD RLRAFSSSLN LPFRFHPLIL PCTAELAADP TAALELHPDE  240
TLAVNCVLFL HKLGGDGELA AFLRWVKSMN PAVVTIAERE GVLGGDVDDD NVPDELPRRV  300
AAAMDYYSSV FDALEATVPP ASADRLAVEQ EILSREIDAA VAAPGAGGGG RARDFDAWAS  360
AARAAGLAPR PLSAFAASQA RLLLRLHYPS EGYKADDDGG RGACFLRWQQ RPLMSVSSWQ  420
PQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-464642226381Protein SCARECROW
5b3h_A1e-464642225380Protein SCARECROW
5b3h_D1e-464642225380Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
192100GGKGGHGGG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6H7L7
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in a small number of epidermal or subepidermal cells at the leaf axils, in axillary meristems and the entire tiller buds. Undetected in the shoot apical meristem. {ECO:0000269|PubMed:12687001}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g10360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g10360
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041910.0AP004191.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1524_D08.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624347.20.0protein MONOCULM 1-like
RefseqXP_025879052.10.0protein MONOCULM 1-like
SwissprotQ84MM91e-131MOC_ORYSJ; Protein MONOCULM 1
TrEMBLQ6H7L70.0Q6H7L7_ORYSJ; Uncharacterized protein OJ1524_D08.25
STRINGOS02T0197300-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Representative plantOGRP54911421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.12e-56GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]