PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g10140.1
Common NameOs02g0194900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 304aa    MW: 31720.6 Da    PI: 9.755
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g10140.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.21.3e-11133172342
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 
                       + k  rr+++NReAAr+sR+RKka+i++Le+    L++  
  LOC_Os02g10140.1 133 DAKTLRRLAQNREAARKSRLRKKAYIQNLETSRIRLSQLE 172
                       67999*************************8655555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.2E-8130175No hitNo description
SMARTSM003382.9E-8131194IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.036133178IPR004827Basic-leucine zipper domain
PfamPF001709.0E-9134174IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.13E-7135178No hitNo description
PROSITE patternPS000360138153IPR004827Basic-leucine zipper domain
PfamPF141448.5E-28220301IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001059developmental stageJ bicellular pollen stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAELDHIFLY LNSQDQASAA IQEQPQTLNI FPSQPMHAGE PSPKGSSSMA AINSAPSNNA  60
LAIAAGSSKR PPAAAAAGGQ PSRLNNPADQ PSASGKDGKA AVVKKEGGGG GGKHHGGASS  120
AAASEHEGPK TPDAKTLRRL AQNREAARKS RLRKKAYIQN LETSRIRLSQ LEQELVQRSR  180
TQGAILGGGA FSAGIGGQSP EAAWFDGEYA RWVESHERMM AHMRAAVEEQ PQHGGVAAAA  240
AEAQLRQLVD AAVAHHGVLV ELKAAVASAD VFHLVSGTWL PAAERCFLWI GGFRPSELIK  300
VST*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ0E342
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g10140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g10140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041841e-175AP004184.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1225_F07.
GenBankAP0149581e-175AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626936.10.0transcription factor TGAL9-like isoform X2
SwissprotQ0E3420.0TGAL9_ORYSJ; Transcription factor TGAL9
TrEMBLI1NY700.0I1NY70_ORYGL; Uncharacterized protein
STRINGOGLUM02G07240.10.0(Oryza glumipatula)
STRINGORGLA02G0067600.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27323669
Representative plantOGRP1445244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.24e-54bZIP family protein
Publications ? help Back to Top
  1. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]