PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g10080.2 | ||||||||
Common Name | LOC4328599, Os02g0194200, OsJ_005555, P0437H03.134 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 232aa MW: 23952.4 Da PI: 9.9155 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.6 | 4.4e-08 | 32 | 57 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ LOC_Os02g10080.2 32 KTRLCNKYNTAEGCKWGDKCHFAHGE 57 8***********************96 PP | |||||||
2 | zf-CCCH | 35.3 | 2e-11 | 197 | 222 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +f + G C +GdrC+FaHg+ LOC_Os02g10080.2 197 FKTKLCENFTK-GSCTFGDRCHFAHGE 222 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-14 | 27 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-8 | 29 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.075 | 30 | 58 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.069 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-5 | 32 | 57 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.46E-14 | 92 | 171 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.9E-9 | 100 | 170 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.676 | 101 | 165 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.0E-14 | 101 | 169 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 9.3E-11 | 103 | 167 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.35E-13 | 103 | 165 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-16 | 194 | 227 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-9 | 196 | 226 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.2E-8 | 196 | 222 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.009 | 196 | 223 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-9 | 197 | 222 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MTNLGGPAIA PPPGRMPMGN AVPDGPPTPT VKTRLCNKYN TAEGCKWGDK CHFAHGEREL 60 GKPMLMDSSM PPPMGPRPTG HFAPPPMPSP AMSTPASFGA SATAKISVDA SLAGGIIGRG 120 GVNTKQISRV TGAKLAIRDH ESDTNLKNIE LEGTFDQIKN ASAMVRELIV SIGGGAPPQG 180 KKPVGGSHRG GGPGSNFKTK LCENFTKGSC TFGDRCHFAH GENELRKSAA A* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.4265 | 0.0 | callus| flower| leaf| panicle| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297598760 | 0.0 | ||||
Expression Atlas | Q7F8R0 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g10080.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g10080 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242341 | 0.0 | AK242341.1 Oryza sativa Japonica Group cDNA, clone: J075199P17, full insert sequence. | |||
GenBank | AP000366 | 0.0 | AP000366.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0437H03. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CT835383 | 0.0 | CT835383.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106D07, full insert sequence. | |||
GenBank | CT835384 | 0.0 | CT835384.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106E07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626985.1 | 1e-167 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q7F8R0 | 1e-168 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A0D9YNN4 | 1e-166 | A0A0D9YNN4_9ORYZ; Uncharacterized protein | ||||
STRING | OGLUM02G07170.1 | 1e-167 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 4e-50 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g10080.2 |
Entrez Gene | 4328599 |
Publications ? help Back to Top | |||
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