PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os02g10080.1 | ||||||||
Common Name | LOC4328599, Os02g0194200, OsJ_005555, P0437H03.134 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 301aa MW: 31153.4 Da PI: 10.1391 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.1 | 6.3e-08 | 101 | 126 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ LOC_Os02g10080.1 101 KTRLCNKYNTAEGCKWGDKCHFAHGE 126 8***********************96 PP | |||||||
2 | zf-CCCH | 34.8 | 2.8e-11 | 266 | 291 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +f + G C +GdrC+FaHg+ LOC_Os02g10080.1 266 FKTKLCENFTK-GSCTFGDRCHFAHGE 291 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.333 | 33 | 61 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.8E-6 | 34 | 60 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-6 | 35 | 59 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-14 | 96 | 131 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-8 | 98 | 130 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.069 | 99 | 126 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.075 | 99 | 127 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-5 | 101 | 126 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 2.53E-14 | 161 | 240 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.9E-9 | 169 | 239 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.676 | 170 | 234 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.8E-14 | 170 | 238 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 5.08E-13 | 172 | 234 | No hit | No description |
Pfam | PF00013 | 1.5E-10 | 172 | 236 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-16 | 263 | 296 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-9 | 265 | 295 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.2E-8 | 265 | 291 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.009 | 265 | 292 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.7E-9 | 266 | 291 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 301 aa Download sequence Send to blast |
MEVGGRKRGK PDGANGAGGK RARESESFQT GVGSKSKPCT KFFSTSGCPF GEGCHFLHHF 60 PGGYQAVAKM TNLGGPAIAP PPGRMPMGNA VPDGPPTPTV KTRLCNKYNT AEGCKWGDKC 120 HFAHGERELG KPMLMDSSMP PPMGPRPTGH FAPPPMPSPA MSTPASFGAS ATAKISVDAS 180 LAGGIIGRGG VNTKQISRVT GAKLAIRDHE SDTNLKNIEL EGTFDQIKNA SAMVRELIVS 240 IGGGAPPQGK KPVGGSHRGG GPGSNFKTKL CENFTKGSCT FGDRCHFAHG ENELRKSAAA 300 * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.4265 | 0.0 | callus| flower| leaf| panicle| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 297598760 | 0.0 | ||||
Expression Atlas | Q7F8R0 | - |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os02g10080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os02g10080 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK242341 | 0.0 | AK242341.1 Oryza sativa Japonica Group cDNA, clone: J075199P17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626985.1 | 0.0 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q7F8R0 | 0.0 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A0E0G383 | 0.0 | A0A0E0G383_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0NB44 | 0.0 | A0A0E0NB44_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2X1Z0 | 0.0 | A2X1Z0_ORYSI; Uncharacterized protein | ||||
STRING | ORUFI02G07250.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS02T0194200-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA02G08800.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1254 | 38 | 127 | Representative plant | OGRP1026 | 17 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06770.1 | 7e-49 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os02g10080.1 |
Entrez Gene | 4328599 |
Publications ? help Back to Top | |||
---|---|---|---|
|