PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g08544.3 | ||||||||
Common Name | HOS58, LOC4328520, Os02g0182800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TALE | ||||||||
Protein Properties | Length: 184aa MW: 20606.9 Da PI: 5.4063 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.5 | 4.7e-08 | 121 | 154 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + LOC_Os02g08544.3 121 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 154 469*****************************87 PP | |||||||
2 | ELK | 27.8 | 5.7e-10 | 75 | 96 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++L+++Y+++L+++++E++ LOC_Os02g08544.3 75 ELKNELKQGYKEKLVDIREEIL 96 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01188 | 0.0023 | 75 | 96 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.057 | 75 | 95 | IPR005539 | ELK domain |
Pfam | PF03789 | 9.2E-7 | 75 | 96 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.353 | 95 | 158 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-10 | 97 | 162 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.74E-16 | 97 | 160 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.23E-11 | 98 | 159 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-25 | 102 | 159 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.7E-18 | 115 | 154 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MEAVMGCWEL EQSLQSLTGA SPGEGTGATM SDDEDNQVDS EANMFDGNDG SDGMGFGPLM 60 LTEGERSLVE RVRHELKNEL KQGYKEKLVD IREEILRKRR AGKLPGDTAS ILKAWWQAHS 120 KWPYPTEDDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP ASSGEKTKKK RNVTGDGGAE 180 QSW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-13 | 98 | 162 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 151 | 170 | RKRNWHSNPASSGEKTKKKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.1983 | 0.0 | callus| leaf| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q0E3C3 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Isoform 1 is expressed in roots, leaf blades, leaf sheaths and flowers. Isoform 2 is expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:12034492}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g08544.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g08544 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB007627 | 0.0 | AB007627.2 Oryza sativa Japonica Group HOS58 mRNA, complete cds. | |||
GenBank | AB061817 | 0.0 | AB061817.1 Oryza sativa Japonica Group HOS58 mRNA for KNOX family class 2 homeodomain protein, partial cds. | |||
GenBank | AK243352 | 0.0 | AK243352.1 Oryza sativa Japonica Group cDNA, clone: J100060L07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626237.1 | 1e-133 | homeobox protein knotted-1-like 2 isoform X1 | ||||
Swissprot | Q0E3C3 | 1e-134 | KNOS2_ORYSJ; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A0E0JWG4 | 1e-132 | A0A0E0JWG4_ORYPU; Uncharacterized protein | ||||
TrEMBL | I1NXX4 | 1e-132 | I1NXX4_ORYGL; Uncharacterized protein | ||||
STRING | OPUNC02G05510.1 | 1e-133 | (Oryza punctata) | ||||
STRING | ORGLA02G0058000.1 | 1e-133 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-102 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g08544.3 |
Entrez Gene | 4328520 |
Publications ? help Back to Top | |||
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