PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g07840.1
Common NameOs02g0175100
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 279aa    MW: 29383.5 Da    PI: 4.8647
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g07840.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.69.6e-17123174458
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                       +kr rr+ +NRe+ArrsR+RK+a ++ Le  v++L +eN +L k   +l++  ++
  LOC_Os02g07840.1 123 VKRVRRMVSNRESARRSRKRKQAHLADLESQVDQLRGENASLFK---QLTDANQQ 174
                       79**************************************9995...55555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.9E-18120184IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.174122174IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.59E-13123175No hitNo description
PfamPF001703.5E-14123172IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.3E-13124175No hitNo description
CDDcd147023.21E-23125175No hitNo description
PROSITE patternPS000360127142IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDIEAFIHGG SGGGDADADH PLGIFSAADL SGFGFADSST ITGGIPNHIW PQSQNLNARH  60
PAVSTTIESQ SSICAAASPT SATNLNMKES QTLGGTSGSD SESESLLDIE GGPCEQSTNP  120
LDVKRVRRMV SNRESARRSR KRKQAHLADL ESQVDQLRGE NASLFKQLTD ANQQFTTSVT  180
DNRILKSDVE ALRVKVKMAE DMVARGALSC GLGHLGGLSP ALNPRQACRV PDVLAGLDYA  240
GDDPFTAGLS QPEQLQMPGG EVVDAWGWDN HPNGGMSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136142RRSRKRK
2136143RRSRKRKQ
3138143SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.495140.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO5564080.0
Expression AtlasQ0E3H1-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g07840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g07840
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0534730.0AB053473.1 Oryza sativa mRNA for RISBZ4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623252.10.0bZIP transcription factor RISBZ4-like isoform X1
SwissprotQ6H5000.0RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA2X1H30.0A2X1H3_ORYSI; Uncharacterized protein
STRINGORUFI02G05790.10.0(Oryza rufipogon)
STRINGONIVA02G06040.10.0(Oryza nivara)
STRINGOBART02G05680.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Representative plantOGRP69561017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.12e-37basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]