PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os02g06860.1 | ||||||||
Common Name | OJ1661_C12.19, Os02g0164450, OSJNBa0023I17.2, OSNPB_020164450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 287aa MW: 30761.7 Da PI: 6.5863 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.1 | 2e-22 | 30 | 74 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k ienk rqv fskRr+g++KKA+ELSvLC+a+vav+ fs+ g+ LOC_Os02g06860.1 30 KLIENKEARQVCFSKRREGVFKKASELSVLCGARVAVVFFSPAGR 74 569***************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.838 | 22 | 82 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.1E-28 | 22 | 81 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.88E-33 | 23 | 91 | No hit | No description |
SuperFamily | SSF55455 | 5.62E-26 | 23 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-17 | 24 | 44 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.8E-24 | 32 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-17 | 44 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.7E-17 | 59 | 80 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 287 aa Download sequence Send to blast |
MAKAAAEMDV GGGEGRRWKR TRGRQRIEMK LIENKEARQV CFSKRREGVF KKASELSVLC 60 GARVAVVFFS PAGRPHCFGH PSVSAVADRF LLGRSPADAA AAAAEEEEAV VREFNRVEER 120 LKDALGAAAR RRDALDEAAR VAGVWNDADV RRAGLADLVS MLAALQRVQA EASERVHDII 180 VEEAMTHYTG AAAAAANLID YLDAGPLVSH SPGSHDTTTK LIGGNAVHAP PLSFPPMIMP 240 PPLPPQFSHG FGYTDLAAGY GYNLDHGHGA AYETEEFHNA AACDFF* |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | Q6H6V9 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os02g06860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os02g06860 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP004093 | 0.0 | AP004093.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1661_C12. | |||
GenBank | AP004863 | 0.0 | AP004863.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0023I17. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878655.1 | 0.0 | agamous-like MADS-box protein AGL28 | ||||
TrEMBL | Q6H6V9 | 0.0 | Q6H6V9_ORYSJ; Os02g0164450 protein | ||||
STRING | ORUFI02G05030.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13309 | 24 | 32 | Representative plant | OGRP16902 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G34440.1 | 8e-21 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os02g06860.1 |