PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g06584.4 | ||||||||
Common Name | B1103G11.54, LOC4328385, OJ9003_G05.19, Os02g0161200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 296aa MW: 34329.3 Da PI: 10.6457 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.1 | 1.3e-07 | 11 | 34 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC ++r G C++ d+C+FaHg LOC_Os02g06584.4 11 YKTKLCALWQR-GNCNR-DTCSFAHG 34 9**********.*****.*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-11 | 5 | 42 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.3E-5 | 9 | 40 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0016 | 10 | 35 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.136 | 10 | 36 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-5 | 11 | 34 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0061158 | Biological Process | 3'-UTR-mediated mRNA destabilization | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003730 | Molecular Function | mRNA 3'-UTR binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage | ||||
PO:0007606 | developmental stage | gynoecium development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MLGPPRRGPA YKTKLCALWQ RGNCNRDTCS FAHGHGDIRR PPSSRGAFTH HPGRRDYRAG 60 DFRGRIDRRF SPRRRHSPGR ESRGHRPLYD RRPSSRERDS SYSRSPSRKS ERRHEKKTDD 120 GETNSSRSLS LSDNNDEKKK DKFSSGDEKE DHEKQLKQIR LDMEALRDDK TQMEVILDEK 180 IDEVRKISSK VNDLEVQLRR EKDECHRMTS KMKKFIKAHA RFLKAQEEVK RSQARFERLG 240 DLLASDILKR GANEEGSSVN EDLNERSPNT AATKKRSIPY STSEEAKAEE KRARL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.15553 | 2e-94 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q6H7U2 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g06584.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g06584 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK122103 | 0.0 | AK122103.1 Oryza sativa Japonica Group cDNA clone:J033125O22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624712.1 | 0.0 | zinc finger CCCH domain-containing protein 13 isoform X3 | ||||
Swissprot | Q6H7U2 | 0.0 | C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13 | ||||
TrEMBL | I1NXH6 | 0.0 | I1NXH6_ORYGL; Uncharacterized protein | ||||
STRING | OS02T0161200-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 1e-33 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g06584.4 |
Entrez Gene | 4328385 |
Publications ? help Back to Top | |||
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