PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g06370.1 | ||||||||
Common Name | B1103G11.17, LOC4328365, Os02g0158400, OsJ_05450, OSNPB_020158400, P0419H03.37 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Whirly | ||||||||
Protein Properties | Length: 229aa MW: 25197.6 Da PI: 10.289 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 182.8 | 6.5e-57 | 52 | 189 | 2 | 139 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 v+k+kaal++++++p+f++l+sg +++++G+++l++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+l LOC_Os02g06370.1 52 VFKGKAALSMQPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSL 144 9******************************************************************************************** PP Whirly 95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 +v Pl + sG+f+n++v n+l+k+ e++s+P+skaef+v+r++l+ LOC_Os02g06370.1 145 SVTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAEFTVMRTALS 189 ******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 6.2E-73 | 39 | 208 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.88E-75 | 43 | 228 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 8.6E-58 | 52 | 186 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MQRLSRFVPS SSRRVTDLKD ALWSGSLTFQ HALSTFAADE NTSGRKFASY TVFKGKAALS 60 MQPILPSFSK LESGGSRVNK NGSVMLTFFP AVGQRKYDYS KKQLFALSPT EVGSLISLGP 120 AESCEFFHDP SMKSSHEGQV KKSLSVTPLG NDSGYFLNIT VLNNLQKTTE RLSLPISKAE 180 FTVMRTALSF ALPHILGWDQ ALTNHQPSPS PASKPRVERP HPDSEWER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 9e-73 | 43 | 205 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 9e-73 | 43 | 205 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 9e-73 | 43 | 205 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 9e-73 | 43 | 205 | 8 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.32450 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32989977 | 0.0 | ||||
Expression Atlas | Q6ET43 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g06370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g06370 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061569 | 0.0 | AK061569.1 Oryza sativa Japonica Group cDNA clone:006-311-F08, full insert sequence. | |||
GenBank | AK099479 | 0.0 | AK099479.1 Oryza sativa Japonica Group cDNA clone:J013025B22, full insert sequence. | |||
GenBank | AK104768 | 0.0 | AK104768.1 Oryza sativa Japonica Group cDNA clone:001-039-A03, full insert sequence. | |||
GenBank | CT828510 | 0.0 | CT828510.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129J03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627387.1 | 1e-168 | single-stranded DNA-binding protein WHY2, mitochondrial | ||||
Swissprot | D9J034 | 2e-75 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | B8AI56 | 1e-167 | B8AI56_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1NXF6 | 1e-167 | I1NXF6_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q6ET43 | 1e-167 | Q6ET43_ORYSJ; Os02g0158400 protein | ||||
STRING | OS02T0158400-01 | 1e-167 | (Oryza sativa) | ||||
STRING | ORGLA02G0041200.1 | 1e-167 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3012 | 38 | 85 | Representative plant | OGRP2316 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 2e-74 | WHIRLY 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g06370.1 |
Entrez Gene | 4328365 |