PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g06330.1
Common NameB1103G11.12, Os02g0158000, P0419H03.32
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 204aa    MW: 20556.6 Da    PI: 5.6365
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g06330.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-181262256
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      +y+GVr+++ +gr++AeIrdp    k++ ++lg+f++ae Aa+a++aa+++l+g+
  LOC_Os02g06330.1 12 RYRGVRRRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAARSLRGA 62
                      69*******.7*********83...36*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-291270IPR001471AP2/ERF domain
PfamPF008477.1E-121261IPR001471AP2/ERF domain
CDDcd000185.02E-151268No hitNo description
PROSITE profilePS5103222.0761269IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-211271IPR016177DNA-binding domain
SMARTSM003801.3E-341275IPR001471AP2/ERF domain
PRINTSPR003678.6E-81324IPR001471AP2/ERF domain
PRINTSPR003678.6E-83551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAGVGVGEGE VRYRGVRRRP SGRYAAEIRD PAKKTPIWLG TFDSAEAAAR AYDAAARSLR  60
GAAARTNFPP STSSSAPPPP PPQHQPPQHL PPAAAAATSS HSSTVESWGV TVAAAAASAG  120
ALGLPPPRNG GSNPAADEDC RSYCGSSSSV LCEDGASGAG DEAAAPRCSP LPFDLNLPAS  180
SPSAAAAAEA DEMDWRCDTL LHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-21373576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.812380.0leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6ET47
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g06330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g06330
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875590.0AK287559.1 Oryza sativa Japonica Group cDNA, clone: J065023L05, full insert sequence.
GenBankAP0048430.0AP004843.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1103G11.
GenBankAP0048710.0AP004871.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0419H03.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623823.11e-140ethylene-responsive transcription factor 3
TrEMBLI1NXF31e-139I1NXF3_ORYGL; Uncharacterized protein
TrEMBLQ6ET471e-139Q6ET47_ORYSJ; Os02g0158000 protein
STRINGORGLA02G0040900.11e-140(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Representative plantOGRP6161718