PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g05510.3
Common NameOsJ_05379
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GATA
Protein Properties Length: 305aa    MW: 32383.6 Da    PI: 4.7069
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g05510.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.71e-15236270133
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                       C++Cg +   Tp++Rrgpdg++tLCnaCGl+++ k
  LOC_Os02g05510.3 236 CHHCGISAasTPMMRRGPDGPRTLCNACGLMWANK 270
                       *****88888**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.2E-7100135IPR010399Tify domain
PROSITE profilePS5132012.794100135IPR010399Tify domain
PfamPF062003.3E-10103134IPR010399Tify domain
PfamPF062034.9E-16161203IPR010402CCT domain
PROSITE profilePS5101713.384161203IPR010402CCT domain
SMARTSM004011.0E-8230282IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-10234270No hitNo description
CDDcd002023.80E-11235274No hitNo description
Gene3DG3DSA:3.30.50.108.1E-14235271IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440236263IPR000679Zinc finger, GATA-type
PfamPF003201.4E-13236270IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSGHHEAKPY QPRRGPAPAD EEAAPAAAAD EAEAEAEVEA MERYEQEQEY EEGEEGEEEE  60
YEGGEGVPMD ADASAAAVAG MDPHGEMVPV AGGEAGGGYP HVASNTLTLS FQGEVYVFES  120
VSAERVQAVL LLLGGRELAP GSGSVPSSSA AYSKKMNFPH RMASLMRFRE KRKERNFDKK  180
IRYTVRKEVA LRMQRNRGQF TSSKSKAEEA TSVITSSEGS PNWGAVEGRP PSAAECHHCG  240
ISAASTPMMR RGPDGPRTLC NACGLMWANK QNGIVEATGV EQHNSAVEEA VSAANGHESQ  300
SGVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.63900.0callus| flower| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329789550.0
Expression AtlasA3A354-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g05510.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g05510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689310.0AK068931.1 Oryza sativa Japonica Group cDNA clone:J023003E02, full insert sequence.
GenBankEU8470150.0EU847015.1 Oryza sativa Japonica Group clone KCS277B09 GATA zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622992.10.0GATA transcription factor 17 isoform X3
SwissprotQ6Z4331e-160GAT17_ORYSJ; GATA transcription factor 17
TrEMBLA3A3541e-158A3A354_ORYSJ; Uncharacterized protein
STRINGORUFI02G03830.11e-159(Oryza rufipogon)
STRINGOS02T0148500-011e-159(Oryza sativa)
STRINGOPUNC02G02970.11e-158(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.24e-65ZIM-LIKE 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]