PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g05510.1 | ||||||||
Common Name | GATA17, LOC4328300, Os02g0148500, P0479D12.16, TIFY2A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GATA | ||||||||
Protein Properties | Length: 329aa MW: 34856.5 Da PI: 4.7257 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.1 | 9.3e-17 | 236 | 273 | 1 | 36 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 C++Cg + Tp++Rrgpdg++tLCnaCGl+++ kg++ LOC_Os02g05510.1 236 CHHCGISAasTPMMRRGPDGPRTLCNACGLMWANKGTM 273 *****88888*************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 12.794 | 100 | 135 | IPR010399 | Tify domain |
SMART | SM00979 | 2.2E-7 | 100 | 135 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.7E-10 | 103 | 134 | IPR010399 | Tify domain |
Pfam | PF06203 | 5.5E-16 | 161 | 203 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.384 | 161 | 203 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 9.249 | 230 | 278 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.2E-12 | 230 | 283 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.23E-12 | 234 | 286 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-15 | 235 | 276 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.61E-14 | 235 | 279 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 236 | 263 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.2E-14 | 236 | 273 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MSGHHEAKPY QPRRGPAPAD EEAAPAAAAD EAEAEAEVEA MERYEQEQEY EEGEEGEEEE 60 YEGGEGVPMD ADASAAAVAG MDPHGEMVPV AGGEAGGGYP HVASNTLTLS FQGEVYVFES 120 VSAERVQAVL LLLGGRELAP GSGSVPSSSA AYSKKMNFPH RMASLMRFRE KRKERNFDKK 180 IRYTVRKEVA LRMQRNRGQF TSSKSKAEEA TSVITSSEGS PNWGAVEGRP PSAAECHHCG 240 ISAASTPMMR RGPDGPRTLC NACGLMWANK GTMREVTKGP PVPLQIVPAA TNDVQNGIVE 300 ATGVEQHNSA VEEAVSAANG HESQSGVA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.6390 | 0.0 | callus| flower| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32978955 | 0.0 | ||||
Expression Atlas | Q6Z433 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g05510.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g05510 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068931 | 0.0 | AK068931.1 Oryza sativa Japonica Group cDNA clone:J023003E02, full insert sequence. | |||
GenBank | EU847015 | 0.0 | EU847015.1 Oryza sativa Japonica Group clone KCS277B09 GATA zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622990.1 | 0.0 | GATA transcription factor 17 isoform X1 | ||||
Swissprot | Q6Z433 | 0.0 | GAT17_ORYSJ; GATA transcription factor 17 | ||||
TrEMBL | A0A0E0N9V1 | 0.0 | A0A0E0N9V1_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI02G03830.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS02T0148500-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4325 | 38 | 68 | Representative plant | OGRP831 | 16 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 1e-70 | ZIM-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g05510.1 |
Entrez Gene | 4328300 |
Publications ? help Back to Top | |||
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