PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os02g03960.1 | ||||||||
Common Name | LOC4328205, Os02g0132500, OsJ_05262, OSNPB_020132500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 164aa MW: 16895 Da PI: 7.5194 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 38.2 | 3.2e-12 | 36 | 79 | 4 | 47 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r+ +NRe+ArrsR RK+ ++ L+ v+ L eN + LOC_Os02g03960.1 36 QRRAKRMLSNRESARRSRMRKQRHLDDLTAQVAHLRRENAHVAT 79 689************************************87664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.6E-16 | 33 | 97 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.783 | 35 | 77 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.6E-10 | 36 | 78 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 6.8E-10 | 37 | 109 | No hit | No description |
SuperFamily | SSF57959 | 3.05E-11 | 37 | 87 | No hit | No description |
CDD | cd14702 | 1.51E-15 | 38 | 86 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 40 | 55 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0080149 | Biological Process | sucrose induced translational repression | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009071 | anatomy | anther wall tapetum | ||||
PO:0001013 | developmental stage | H late unicellular microspore stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MASSSGSGGS AVSAATAAAG GSSSAAEEEL RALMEQRRAK RMLSNRESAR RSRMRKQRHL 60 DDLTAQVAHL RRENAHVATA LGLTTQGLLA VDAENAVLRT QAAELAARLA SLNDILSCIN 120 TNGAAAAAAA ALTVAAATDP LLAFDSAAFD DLFRSSPELF QLC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 49 | 56 | RRSRMRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.21442 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32980910 | 0.0 | ||||
Expression Atlas | Q0E476 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in stems and flowers (PubMed:9620274). Expressed in root tips, cotyledons, leaf vasculature, embryos, apical parts of siliques and funiculi (PubMed:9721683). {ECO:0000269|PubMed:9620274, ECO:0000269|PubMed:9721683}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the DNA sequence 5'-ACTCAT-3' in target gene promoters. Promotes POX1/PRODH1 expression in response to hypoosmolarity stress (PubMed:15047879). Positively regulates the expression of ASN1 and POX2/PRODH2 genes, which are involved in amino acid metabolism (PubMed:18088315). Regulates several metabolic pathways such as myo-inositol, raffinose and trehalose. Regulates several trehalose metabolism genes, including TRE1, TPP5 and TPP6 (PubMed:21534971). Mediates recruitment of the histone acetylation machinery to activate auxin-induced transcription. Interacts with ADA2B adapter protein to promote ADA2B-mediated recruitment of SAGA-like histone acetyltransferase complexes to specific auxin-responsive genes (PubMed:24861440). {ECO:0000269|PubMed:15047879, ECO:0000269|PubMed:18088315, ECO:0000269|PubMed:21534971, ECO:0000269|PubMed:24861440}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00470 | DAP | Transfer from AT4G34590 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os02g03960.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light (PubMed:9620274). Induced by hypoosmolarity (PubMed:15047879). Repressed by sucrose (at protein level) (PubMed:9721683, PubMed:15208401). {ECO:0000269|PubMed:15047879, ECO:0000269|PubMed:15208401, ECO:0000269|PubMed:9620274, ECO:0000269|PubMed:9721683}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os02g03960 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070887 | 0.0 | AK070887.1 Oryza sativa Japonica Group cDNA clone:J023064O22, full insert sequence. | |||
GenBank | AP004997 | 0.0 | AP004997.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0030G11. | |||
GenBank | AP014958 | 0.0 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622690.1 | 1e-109 | bZIP transcription factor 11 | ||||
Swissprot | O65683 | 3e-35 | BZP11_ARATH; bZIP transcription factor 11 | ||||
TrEMBL | A0A0E0G0P0 | 1e-107 | A0A0E0G0P0_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0N9D2 | 1e-107 | A0A0E0N9D2_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2X0K0 | 1e-107 | A2X0K0_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1NWZ1 | 1e-107 | I1NWZ1_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q0E476 | 1e-107 | Q0E476_ORYSJ; Os02g0132500 protein | ||||
STRING | ORUFI02G02580.1 | 1e-108 | (Oryza rufipogon) | ||||
STRING | OS02T0132500-01 | 1e-108 | (Oryza sativa) | ||||
STRING | ONIVA02G02510.1 | 1e-108 | (Oryza nivara) | ||||
STRING | ORGLA02G0024700.1 | 1e-108 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4459 | 33 | 67 | Representative plant | OGRP551 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34590.1 | 3e-28 | G-box binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os02g03960.1 |
Entrez Gene | 4328205 |